View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_28 (Length: 239)
Name: NF5953_low_28
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_28 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 42520130 - 42519909
Alignment:
| Q |
18 |
cacattatgtgttagaacttacattctttctattgcagaagacacgaaacgaactgaaaagctccttagattcgttgtccatttgtcgcatatatgctct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520130 |
cacattatgtgttagaacttacattctttctattgcagaagacacgaaacgaactgaatagctccttagattcgttgtccatttgtcgcatatatgctct |
42520031 |
T |
|
| Q |
118 |
gcctacatcatcattggcatcaacagatacatggcttccagctgcattaatgaatcattgaagtaattaacgtgtgcatggtattctgaaataatatatc |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520030 |
gcctacatcatcattggcatcaacagatacgtggcttccagctgcattaatgaatcattgaagtaattaacgtgtgcatggtattctgaaataatatatc |
42519931 |
T |
|
| Q |
218 |
attcaatgaaaaatatttaggc |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
42519930 |
attcaatgaaaaatatttaggc |
42519909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 42528303 - 42528082
Alignment:
| Q |
18 |
cacattatgtgttagaacttacattctttctattgcagaagacacgaaacgaactgaaaagctccttagattcgttgtccatttgtcgcatatatgctct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42528303 |
cacattatgtgttagaacttacattctttctattgcagaagacacgaaacgaactgaaaagctccttagattcgttgtccatttgtcgcatatatgctct |
42528204 |
T |
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| Q |
118 |
gcctacatcatcattggcatcaacagatacatggcttccagctgcattaatgaatcattgaagtaattaacgtgtgcatggtattctgaaataatatatc |
217 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42528203 |
gcctacatcgttattggcatcaacagatacatggcttccagctgcattaatgaatcattgaagtaattaacgtgtgcatggtattctgaaataatatatc |
42528104 |
T |
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| Q |
218 |
attcaatgaaaaatatttaggc |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
42528103 |
attcaatgaaaaatatttaggc |
42528082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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