View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_31 (Length: 229)
Name: NF5953_low_31
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 40467305 - 40467131
Alignment:
| Q |
16 |
atgggtggaacaagatagggtttcacgagctcatcacatacagtacgttccaaagtgtgtgacaaaagtttcaagactagctatgggtggatcacgagtg |
115 |
Q |
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| T |
40467305 |
atgggtggaacaagatagggtttcacgagctcatcacatacagtacgttccaaagtgtgtgacaaaagtttcaagactagctatgggtggatcacgagtg |
40467206 |
T |
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| Q |
116 |
caataagagaataagtttcaaaactattttttaaaagagcaaaatatactagaatataagtttcaatccaaattg |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40467205 |
caataagagaataagtttcaaaactattttttaaaagagcaaaatatactagaatataagtttcaatcctaattg |
40467131 |
T |
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