View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_33 (Length: 216)
Name: NF5953_low_33
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 29364932 - 29365112
Alignment:
| Q |
20 |
gaattagttggactagtagatacatcgctaaacggggaatttgatgccgagcaggcatgtaaatttctgaagattggccttctttgcactcaggaatctc |
119 |
Q |
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| T |
29364932 |
gaattagttggactagtagatacatcgctaaacggggaatttgatgccgagcaggcatgtaaatttctgaagattggccttctttgcactcaggaatctc |
29365031 |
T |
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| Q |
120 |
ctaagagccgaccgtccatgtctactgtggtcaagatgcttacaggagaaatgaaagtcgatgacagtatgatgacaaaac |
200 |
Q |
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| T |
29365032 |
ctaagagccgaccgtccatgtctactgtggtcaagatgcttacaggagaaatgaaagtcgatgacagtatgatgacaaaac |
29365112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 29357838 - 29358018
Alignment:
| Q |
20 |
gaattagttggactagtagatacatcgctaaacggggaatttgatgccgagcaggcatgtaaatttctgaagattggccttctttgcactcaggaatctc |
119 |
Q |
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| T |
29357838 |
gaattagttggactgatagatacatcactaaacggggaattcgatgccgagcaggcctgcaagtttctgaagattggccttctttgcactcaagaatctc |
29357937 |
T |
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| Q |
120 |
ctaagagccgaccgtccatgtctactgtggtcaagatgcttacaggagaaatgaaagtcgatgacagtatgatgacaaaac |
200 |
Q |
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| T |
29357938 |
caaagcgccggccatccatgtcttctgtggtaaagatgcttaccggagaaatggaagttgacgacagtatgatgacaaaac |
29358018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 21530209 - 21530334
Alignment:
| Q |
47 |
ctaaacggggaatttgatgccgagcaggcatgtaaatttctgaagattggccttctttgcactcaggaatctcctaagagccgaccgtccatgtctactg |
146 |
Q |
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||||| || ||||| ||||| ||| |||| |||||| |||||||||||| ||||||||| |||||||| | |||||| ||| || |||||||| ||| |
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| T |
21530209 |
ctaaatggcgaattcgatgctgaggaggcttgtaaaattctgaagattgcccttctttgtactcaggatacacctaagctccggccaaccatgtcttctg |
21530308 |
T |
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| Q |
147 |
tggtcaagatgcttacaggagaaatg |
172 |
Q |
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||||||| ||||| || ||||||||| |
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| T |
21530309 |
tggtcaaaatgctcaccggagaaatg |
21530334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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