View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5953_low_8 (Length: 405)
Name: NF5953_low_8
Description: NF5953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5953_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 4145149 - 4144779
Alignment:
| Q |
16 |
acatttaacagggagaaaactaaggatatcaaacaccaagtcttcagggattaacaactttgaaatcactttacaactcttactactataggaattttgc |
115 |
Q |
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| T |
4145149 |
acatttaacagggagaaaactaaggatatcaaacaccaagtcttcagggattaacaactttgaaatcactttacaactcttaccactataggaattttgc |
4145050 |
T |
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| Q |
116 |
ttcatattcttaatggaatgatcctcatgtgacttatagtttgactcagagaaactgtacttctttatggatttatatcttcccattatcaattaatcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145049 |
ttcatattcttaatggaatgatcctcatgtgacttagagtttgactcagagaaactgtacttctttatggatttatatcttcccattatcaattaatcaa |
4144950 |
T |
|
| Q |
216 |
attaaacttgtcctgcttcaatcattgcataacatatcggcccaaacaaacatcacattagttaaaccatcaataatcatcaataatatgaaaagtatac |
315 |
Q |
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| T |
4144949 |
attaaacttgtcctgcttcaatcactgcataacatatcggcccaaacaaacatcacattagtta----------aatcatcaataatatgaaaagtatac |
4144860 |
T |
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| Q |
316 |
tatgtatagaatctgaaactacaatgctctaacgataatcactcatactttttcagagggattggaattttaaagaataat |
396 |
Q |
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| T |
4144859 |
tatgtatagaatctgaaactacaatgctctaacgataatcacttatactttttcagagggattggaattttaaagaataat |
4144779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 39571620 - 39571552
Alignment:
| Q |
32 |
aaactaaggatatcaaacaccaagtcttcagggattaacaactttgaaatcactttacaactcttacta |
100 |
Q |
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| T |
39571620 |
aaactaaagatatcaaacaataaatcttcagggagcagcaactttgaaatcactttacaactcttacta |
39571552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 9841251 - 9841190
Alignment:
| Q |
36 |
taaggatatcaaacaccaagtcttcagggattaacaactttgaaatcactttacaactctta |
97 |
Q |
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|||||| || ||||| |||||||||| | | |||||||||||||||||||||||||||||| |
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| T |
9841251 |
taaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcactttacaactctta |
9841190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 9846331 - 9846270
Alignment:
| Q |
35 |
ctaaggatatcaaacaccaagtcttcagggattaacaactttgaaatcactttacaactctt |
96 |
Q |
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| T |
9846331 |
ctaaggatatcaaacaccaagtgttcaggaagcaacagcgttgaaatcacttcacaactctt |
9846270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 9902204 - 9902143
Alignment:
| Q |
36 |
taaggatatcaaacaccaagtcttcagggattaacaactttgaaatcactttacaactctta |
97 |
Q |
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||||||||| ||||| |||||||||||| | |||| ||||||||| |||| |||||||||| |
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| T |
9902204 |
taaggatataaaacatcaagtcttcaggaagcaacacctttgaaattacttcacaactctta |
9902143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 49388351 - 49388425
Alignment:
| Q |
52 |
caagtcttcagggattaacaactttgaaatcactttacaactcttactactataggaattttgcttcatattctt |
126 |
Q |
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|||||||||||||| | || |||||||||||||||| |||||| | |||||| || ||||| ||||||||||| |
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| T |
49388351 |
caagtcttcagggagaagcagctttgaaatcactttataactctcagtactatttgagttttggttcatattctt |
49388425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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