View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_high_10 (Length: 429)
Name: NF5954_high_10
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Complemental strand, 8568406 - 8568009
Alignment:
| Q |
12 |
aagaagaagaaacagaactaagagtgtcattgagtgcccaaaacaaaggtggtcctgcaagataacatgttagacatattcccataatccaaaacaaaac |
111 |
Q |
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| T |
8568406 |
aagaagaagaaacagaactaagagtgtcattgagtgcccaaaacaaaggtggtcctgcaagataacatgttagacatattcccataatccaaaacaaaac |
8568307 |
T |
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| Q |
112 |
tttgaatgctctttgctgcctcctattcatttttatctggattcagcagcaaattattggggaaataattaagaggatcttgatgattttgagttggtta |
211 |
Q |
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| T |
8568306 |
tttgaatgctctttgctgcctcctattcatttttttctggattcagcagcaaattattggggaaataattaagaggatcttgatgattttgagttggtta |
8568207 |
T |
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| Q |
212 |
aggttattcagtttcaagatttgcgtatctctctcactctcacctttcacccacatgcatacctacgtgtgtctcactatactctattttttgttttggt |
311 |
Q |
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| T |
8568206 |
aggttattcagtttcaagatttgcgtatctctctcactctcacctttcacccacatgcatacctacgtgtgtctcactatactctattttttgttttggt |
8568107 |
T |
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| Q |
312 |
cattctcttgttattattgattaattttgatttataataatcaactaatttaaggttgattatctcactcacaagtgtcacatgtgtgagtgagcctt |
409 |
Q |
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| T |
8568106 |
cattctcttgttattattgattaattttgatttataataatcaactaatttaaggttgattatctcactcacaagtgtcacatgtgttagtgagcctt |
8568009 |
T |
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