View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_high_12 (Length: 419)
Name: NF5954_high_12
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 132 - 404
Target Start/End: Original strand, 9213338 - 9213611
Alignment:
| Q |
132 |
gttggtgttgctaatggtggacaatattctgaatcagaattttcagaatcaatagaacatgatgaaacaatgttattcatttgttgcaatttttggttca |
231 |
Q |
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| T |
9213338 |
gttggtgttgctaatggtggacaatattctgaatcagaattttcagaatcaatagaacatgatgaaacaatgttattcatttgttgcaatttttggttca |
9213437 |
T |
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| Q |
232 |
ttgtttt-tgtgtctcatcggtgtcttctccggaaccggagacgataccgatgtcggcgaatgtttggaacatagatttgtcaagtgggtttgtggagat |
330 |
Q |
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| T |
9213438 |
ttgttttttgtgtctcatcggtgtcttctccggaaccggagacgataccgatgtcggcgaatgtttggaacatagatttgtcaagtggatttgtggagat |
9213537 |
T |
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| Q |
331 |
aagatctatttctgagttagattctgacgaggatgtttggaacatagatttggcttggtgtatgaggttccaat |
404 |
Q |
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| T |
9213538 |
aagatctatttctgagttagattctgacgaggatgtttggaacatagatttagcttggtgtactaggttccaat |
9213611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 404
Target Start/End: Complemental strand, 9194514 - 9194416
Alignment:
| Q |
306 |
atttgtcaagtgggtttgtggagataagatctatttctgagttagattctgacgaggatgtttggaacatagatttggcttggtgtatgaggttccaat |
404 |
Q |
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| T |
9194514 |
atttgtcaaatggggtggtggaggtaagatctaaatttgagtttgattctgacgaggatgtttggaacatagatttagcttggtgcacgaggttccaat |
9194416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 9194815 - 9194755
Alignment:
| Q |
9 |
ttctctctcctttgtctctctgcttccacatagttcgtcggtgtttgaattcctgctaatg |
69 |
Q |
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| T |
9194815 |
ttctctctcctttgtctctctgcttccacatggttcatcggtgtttgagttcctgttaatg |
9194755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 9194690 - 9194627
Alignment:
| Q |
137 |
tgttgctaatggtggacaatattctgaatcagaattttcagaatcaatagaacatgatgaaaca |
200 |
Q |
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| T |
9194690 |
tgttgctaacagtggacaatattctgaatcagaatcttcagaatctaaagaacatgatgaaaca |
9194627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 9213215 - 9213275
Alignment:
| Q |
9 |
ttctctctcctttgtctctctgcttccacatagttcgtcggtgtttgaattcctgctaatg |
69 |
Q |
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| T |
9213215 |
ttctctctcctttgtctctctgcttccacatggttcattggtgtttgagttcctgataatg |
9213275 |
T |
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