View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_high_16 (Length: 372)
Name: NF5954_high_16
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 341
Target Start/End: Complemental strand, 16234013 - 16233688
Alignment:
| Q |
22 |
gttcaagcttacctcaattattaactccactagaagctccttcattaatggatattgaaaatgcttgggaccatttcctcttttat-gatgccggtacaa |
120 |
Q |
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| T |
16234013 |
gttcaagcttacctcaattattaactccacaagtagctccttcattgatggatattgaaaatgcttgggaccatttcctcttttccagatgccggtacaa |
16233914 |
T |
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| Q |
121 |
tagaatcatcgagtatagggttccagaagcctctaggatcagacaaaacccagcttacttttgttggtggtcttgctaagttatggatggaacctttatc |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
16233913 |
tagaatcatcgaggatagggttccagaagcctctaggatcagacaaaacccagcttacttttgttggtagtcttgctaagttatggatggaatctttatc |
16233814 |
T |
|
| Q |
221 |
gtcttcccctattttgattttcttctgagaatcattttcttcgt-----acatttgaaaactaactgaaaaggcagcacaaattagatggtagcaatcca |
315 |
Q |
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| T |
16233813 |
ggcttcccctattttgattttcttctgagaatcattttcttcgtaatccatatttgaaaactaactgaaaaggcagcacaaattagatgctagcaatcca |
16233714 |
T |
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| Q |
316 |
tacatattatttaaactccattgcta |
341 |
Q |
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|||||||||||||||||||||||||| |
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| T |
16233713 |
tacatattatttaaactccattgcta |
16233688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 41223007 - 41223246
Alignment:
| Q |
22 |
gttcaagcttacctcaattattaactccactagaagctccttcattaatggatattgaaaatgcttgggaccatttcctcttttatgatgccggtacaat |
121 |
Q |
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| T |
41223007 |
gttcaagcttacctcaattattaactccactagtagctccttcattgatggatattgaaaatgcttcggaccatttcctcttttcagatgccggtacaac |
41223106 |
T |
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| Q |
122 |
agaatcatcgagtatagggttccagaagcctctaggatcagacaaaacccagcttacttttgttggtggtcttgctaagttatggatggaacctttatcg |
221 |
Q |
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| T |
41223107 |
agaatcatcgaggaaagggttccagaagcctctaggatcagacaaaacccagctcacttttgttggtggtcttgctaagttatggatggaacctctatcg |
41223206 |
T |
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| Q |
222 |
tcttcccctattttgattttcttctgagaatcattttctt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
41223207 |
tcttcccctattttgattttcttctgagaatcattttctt |
41223246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 58 - 253
Target Start/End: Original strand, 41217262 - 41217458
Alignment:
| Q |
58 |
ctccttcattaatggatattgaaaa-tgcttgggaccatttcctcttttatgatgccggtacaatagaatcatcgagtatagggttccagaagcctctag |
156 |
Q |
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|||||||||| | |||||||||||| || || | ||||||| |||||| |||| ||||||||||||||||| || | |||| |||||||||| | || |
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| T |
41217262 |
ctccttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttcagatgttggtacaatagaatcatctaggaaagggctccagaagccaccag |
41217361 |
T |
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| Q |
157 |
gatcagacaaaacccagcttacttttgttggtggtcttgctaagttatggatggaacctttatcgtcttcccctattttgattttcttctgagaatc |
253 |
Q |
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|| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
41217362 |
gaccagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctccgtcgtcttcccccgttttgattttcttctgagaatc |
41217458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 41223284 - 41223341
Alignment:
| Q |
265 |
acatttgaaaactaactgaaaaggcagcacaaattagatggtagcaatccatacatat |
322 |
Q |
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| T |
41223284 |
acatttgaaaactaactgaaaaggcagcacaaattagatagtagcaatccatacatat |
41223341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 1598644 - 1598403
Alignment:
| Q |
30 |
ttacctcaattattaactccactagaagctccttc------attaatggatattgaaaatgcttgggaccatttcctcttttatgatgccggtacaatag |
123 |
Q |
| |
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||||||||| ||| ||||||||||| ||||||||| ||| |||||||| |||||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
1598644 |
ttacctcaactataaactccactagtagctccttcgaattcattgatggatatcgaaaatgcttcggaccatttcctcttttcagatgctggtacaatat |
1598545 |
T |
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| Q |
124 |
aatcatcgagtatagggttccagaagcctctaggatcagacaaaacccagcttacttttgttggtggtcttgctaagttatggatggaacctttatcgtc |
223 |
Q |
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||||||| || | ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |
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| T |
1598544 |
aatcatctaggaaagggttccagaagccctcgggactagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctatcgtc |
1598445 |
T |
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| Q |
224 |
ttcccctattttgattttcttctgagaatcattttcttcgta |
265 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||| |
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| T |
1598444 |
ttcccccgttttgattttcttctgagaatcatttttttcgta |
1598403 |
T |
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