View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_high_2 (Length: 803)
Name: NF5954_high_2
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 668; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 16 - 787
Target Start/End: Complemental strand, 2369588 - 2368808
Alignment:
| Q |
16 |
atgcagatttatattcatacacctgtgtagccaaatataaacaatggatcatagtaatatcttgttgatgcatggtaacatcatagacaagctgttgcaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369588 |
atgcagatttatattcatacacctgtgtagccaaatataaacaatggatcatagtaatatcttgttgatgcatggtaacatcatagacaagctgttgcaa |
2369489 |
T |
|
| Q |
116 |
attaattgaattcactgctcataatacaaattaatcacaattatgattaaaa-gttgatacaagaaaccaagatgagagatgagattgtgataagaaaga |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369488 |
attaattgaattcaatgctcataatacaaattaatcacaattatgattaaaaagttgatacaagaaaccaagatgagagatgagattgtgataagaaaga |
2369389 |
T |
|
| Q |
215 |
gatgaggagcagcatcgttcatgattcctcttaaaataacattggggatacggaggcaaaatagattctgataatgggttccaaaaattggccgtgattg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
2369388 |
gatgaggagcagcatcgttcatgattcctcttaaaataacattggggatatggaggcaaaatagattatgataatgggttccagaaattggccgtgattg |
2369289 |
T |
|
| Q |
315 |
agaatgagaaacatgtcataagatatcttcataacaagttttaataagagaatccaaacagacctaaataaattaaagttaagggc-ttcatatacatac |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
2369288 |
agaatgagaaacatgtcataagatatcttcataacaagttttaataagacaatccaaacagacctaaa-----taaagttaagggctttcatatacatac |
2369194 |
T |
|
| Q |
414 |
aacaataattgttcattgcaaacatccaactgaaattcaaaactatatatgttgct-aacagcaattagcatacattattattaatctaaaaatttagca |
512 |
Q |
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| T |
2369193 |
aacaataattgttcattgcaaacatccaactgaaattcaaaactatatatgttgctaaacagcaattagcatacattattattaatctaaaaatttagca |
2369094 |
T |
|
| Q |
513 |
tccatgatcatgctcaaagttgcat-----------atatatttgcccctgtatcacttccatcttttgccaaattttccatgcttaaacttgccaaaac |
601 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2369093 |
tccatgatcatgctcaaagttgcatatatatacttaatatatttgcccctgtatcacttccatcgtttgccaaattttccatgcttaaacttgccaaaac |
2368994 |
T |
|
| Q |
602 |
caaacctaccatgcttccaacgcttgccaaatttgccatgcttatacttcccatgtccataaccataaccataaccatgatgataacctccatgtccata |
701 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2368993 |
caaacctaccatgcttccaacgcttgccaaatttgccatgcttatacttcccatgtccataaccataaccataaccatgatggtaacctccatgtccatg |
2368894 |
T |
|
| Q |
702 |
agacagatggtgagcaccgtatgcagctgccgcccctgcgatcaatcctcctataccagatccacgccctttatacaacaataaat |
787 |
Q |
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| T |
2368893 |
agacagatggtgagcaccatatgcagctgccgcccctgcgatcaatcctcctataccagatccacgccctttatacaacaataaat |
2368808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 164 - 321
Target Start/End: Complemental strand, 36698053 - 36697896
Alignment:
| Q |
164 |
aaaagttgatacaagaaaccaagatgagagatgagattgtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggat |
263 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |
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| T |
36698053 |
aaaaattgatacaagaaaccaagatgagagatgagattgtgataagaaagagatgaggagcaacatcgttcatgattcctcttaaaataacatggaggat |
36697954 |
T |
|
| Q |
264 |
acggaggcaaaatagattctgataatgggttccaaaaattggccgtgattgagaatga |
321 |
Q |
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| T |
36697953 |
atggaggcaaaatagattctgataatgggttccagaaattggccgtgattgagaatga |
36697896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 20104701 - 20104598
Alignment:
| Q |
187 |
atgagagatgagattgtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatacggaggcaaaatagattctgat |
286 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||| |||||||| |||||| ||||||||| ||| |
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| T |
20104701 |
atgagagatgtcattgtgataagaaagagacgaggagcagcatcctccatgattcttcttaaaataaca-tggggatatggaggccaaatagatttcgat |
20104603 |
T |
|
| Q |
287 |
aatgg |
291 |
Q |
| |
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||||| |
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| T |
20104602 |
aatgg |
20104598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 670 - 760
Target Start/End: Complemental strand, 2365506 - 2365416
Alignment:
| Q |
670 |
ccataaccatgatgataacctccatgtccataagacagatggtgagcaccgtatgcagctgccgcccctgcgatcaatcctcctataccag |
760 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| || | ||||| | || |||||||||||||| |
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| T |
2365506 |
ccatgaccatgatgataacctccatgtccatgtgacagatggtgagaaccgtatgcagccacccctcctgcaaacagtcctcctataccag |
2365416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 587
Target Start/End: Complemental strand, 2365663 - 2365550
Alignment:
| Q |
476 |
aattagcatacattattattaatctaaaaatttagcatccatgatcatgctcaaagttgcat-----atatatttgcccctgtatcacttccatcttttg |
570 |
Q |
| |
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||||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||| || ||||||| ||| ||| |||||||||||| ||| |
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| T |
2365663 |
aattagcatacat---tattcatctaataattcagcattgatgatcatgctcaaagttggatatttaatatattcgcctctgcatcacttccatcccttg |
2365567 |
T |
|
| Q |
571 |
ccaaattttccatgctt |
587 |
Q |
| |
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|| |||||||||||||| |
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|
| T |
2365566 |
ccgaattttccatgctt |
2365550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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