View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5954_high_23 (Length: 315)

Name: NF5954_high_23
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5954_high_23
NF5954_high_23
[»] chr3 (1 HSPs)
chr3 (15-308)||(36574595-36574888)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 36574888 - 36574595
Alignment:
Q  15 cattttattagttaaaaaattgtttctaaatatcctaaatatttgcaggttggagagccgaacatggatcacaggtgttgggaaaggccggaggacatgg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36574888 cattttattagttaaaaaattgtttctaaatatcctaaatatttgcaggttggagagccgaacatggatcacaggtgttgggaaaggccggaggacatgg 36574789  T
Q  115 acactccacgcaatgtgtataaggtctcggctcaaaatccaggttctgatgtcgcggctgagacggctgctgcattggcagcgtcttcattagtattcag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36574788 acactccacgcaatgtgtataaggtctcggctcaaaatccaggttctgatgtcgcggctgagacggctgctgcattggcagcgtcttcattagtattcag 36574689  T
Q  215 agatacagatccatcatattcctccaaattgcttcaagcagccatccaagtatgttcctcttctaaaacacaatttttcctagttttcatctct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36574688 agatacagatccatcatattcctccaaattgcttcaagcagccatccaagtatgttcctcttctaaaacacaatttttcctagttttcatctct 36574595  T

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