View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5954_high_24 (Length: 290)

Name: NF5954_high_24
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5954_high_24
NF5954_high_24
[»] chr8 (12 HSPs)
chr8 (18-150)||(36196475-36196607)
chr8 (183-273)||(36196352-36196442)
chr8 (18-150)||(36209598-36209731)
chr8 (30-146)||(36184218-36184334)
chr8 (183-271)||(36188033-36188121)
chr8 (185-273)||(36184089-36184179)
chr8 (18-146)||(36188158-36188290)
chr8 (183-236)||(36209512-36209565)
chr8 (38-117)||(36200418-36200497)
chr8 (198-260)||(36201749-36201811)
chr8 (191-260)||(36214245-36214316)
chr8 (200-260)||(36203149-36203209)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 36196607 - 36196475
Alignment:
Q  18 aatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36196607 aatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtc 36196508  T
Q  118 acttttgctaaatagtatagcatattgtagctg 150  Q
    |||||||||||||||||||||||||||||||||    
T  36196507 acttttgctaaatagtatagcatattgtagctg 36196475  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 36196442 - 36196352
Alignment:
Q  183 atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatatt 273  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36196442 atattaacttggagtgcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatatt 36196352  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 36209731 - 36209598
Alignment:
Q  18 aatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtc 117  Q
    |||||| |||||||||||||||||||||||| |||||||| ||| ||| | |||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  36209731 aatttcctctgtggttctttaaagggagggaagaattcaccttcctctctaataagatggtttgaactatgtttggtatggttggttctgttaacaagtc 36209632  T
Q  118 act-tttgctaaatagtatagcatattgtagctg 150  Q
    | | |||||||||||||||| |||||||||||||    
T  36209631 attgtttgctaaatagtataacatattgtagctg 36209598  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 36184334 - 36184218
Alignment:
Q  30 ggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtcacttttgctaaa 129  Q
    |||||||| ||||||||  |||||| |  ||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  36184334 ggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaactatgtttggtatggttggttctgttaacatgtcacttttgctaaa 36184235  T
Q  130 tagtatagcatattgta 146  Q
    ||||||| |||||||||    
T  36184234 tagtataacatattgta 36184218  T

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Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 36188121 - 36188033
Alignment:
Q  183 atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaata 271  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  36188121 atattaacttggagtgcaaggctatggtttgacctgataaataattgtataattctgaagtcttttgtactatgtttgaaatctcaata 36188033  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 36184179 - 36184089
Alignment:
Q  185 attaacttggagggcaaggctatgcttt-gacctgataaataattgtataa-ttgtaaaggcttttgtactatgtttgaaatctcaatatt 273  Q
    |||||||| ||| | ||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36184179 attaactttgagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatatt 36184089  T

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Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 36188290 - 36188158
Alignment:
Q  18 aatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttc---tgttaacaa 114  Q
    |||||| ||||||| ||||||||||||||| ||||||||| ||| ||| | |||||||||||||||||| |||||| ||||||  |||   |||||||||    
T  36188290 aatttcctctgtggctctttaaagggaggggggaattcaccttcctctctaataaaatggtttgaactaggtttggtatggtttgttctgttgttaacaa 36188191  T
Q  115 gtca-cttttgctaaatagtatagcatattgta 146  Q
    ||||   |||||||||||||||| |||||||||    
T  36188190 gtcatggtttgctaaatagtataacatattgta 36188158  T

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Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 36209565 - 36209512
Alignment:
Q  183 atattaacttggagggcaaggctatgctttgacctgataaataattgtataatt 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36209565 atattaacttggagtgcaaggctatgctttgacctgataaataattgtataatt 36209512  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 36200497 - 36200418
Alignment:
Q  38 aaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtc 117  Q
    |||| ||| ||||||||||||||| ||||||| ||||| |||||||||  |||||| ||||||  |||||||||||||||    
T  36200497 aaagagagagaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtc 36200418  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 36201811 - 36201749
Alignment:
Q  198 gcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttg 260  Q
    ||||||||||| ||| ||| ||||||||||| | |||||||| |||||||||||| |||||||    
T  36201811 gcaaggctatgttttaaccagataaataattttgtaattgtataggcttttgtacgatgtttg 36201749  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 36214316 - 36214245
Alignment:
Q  191 ttggagggcaaggctatgctttgacctgataaataattgtataattgtaaag--gcttttgtactatgtttg 260  Q
    |||||| | ||| ||||| ||||||||||||||||||| | ||||||||| |  ||||||||||||||||||    
T  36214316 ttggagtgtaagtctatgttttgacctgataaataattatgtaattgtaagggcgcttttgtactatgtttg 36214245  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 36203209 - 36203149
Alignment:
Q  200 aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttg 260  Q
    ||||||||| ||| | ||||||||||||||  |||||||| | ||||||||||||| ||||    
T  36203209 aaggctatgtttttaactgataaataattgcgtaattgtacaagcttttgtactatttttg 36203149  T

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