View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_high_29 (Length: 251)
Name: NF5954_high_29
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 641460 - 641694
Alignment:
| Q |
15 |
aatatcacataagccaactaagcaaaaacttgcaacacaatcacaaaatcaagtccatgtagtcaactaccaaaacaaaaccatacttcaacacctttaa |
114 |
Q |
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| T |
641460 |
aatatcacataagccaactaagcaaaaacttgcaacacaatcacaaaatcaagtccatgtagtcaactaccaaaacaaaaccatacttaaacacctttaa |
641559 |
T |
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| Q |
115 |
tnnnnnnnnntaaggtcatcggaaagaaaaagatacctccatatccgttgccacaacttatacataagctgaagaggaaaaccaatccccacaaaataaa |
214 |
Q |
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| T |
641560 |
taaaaaaaaaaaaggtcatcggaaagaaaaagatacctccatatccgttgccacaacttatccataagctgaagaggaaaaccaatccccacaaaataaa |
641659 |
T |
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| Q |
215 |
aaccaaagacagagaaactttataaagacaatttc |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
641660 |
aaccaaagacagagaaactttataaagacaatttc |
641694 |
T |
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