View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5954_high_7 (Length: 569)

Name: NF5954_high_7
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5954_high_7
NF5954_high_7
[»] chr3 (15 HSPs)
chr3 (1-569)||(39561459-39562020)
chr3 (274-569)||(39568829-39569124)
chr3 (274-569)||(39581349-39581644)
chr3 (274-569)||(39566168-39566463)
chr3 (273-569)||(39584987-39585283)
chr3 (277-569)||(39571646-39571938)
chr3 (310-569)||(39574830-39575083)
chr3 (1-194)||(39566511-39566699)
chr3 (1-160)||(39560558-39560710)
chr3 (104-193)||(39572030-39572119)
chr3 (1-70)||(39581077-39581146)
chr3 (121-189)||(39581181-39581249)
chr3 (1-73)||(39572131-39572203)
chr3 (2-57)||(39584700-39584755)
chr3 (7-49)||(39574561-39574603)


Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Complemental strand, 39562020 - 39561459
Alignment:
Q  1 tgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatgttagtgctcaaggat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39562020 tgcatggtttaagattaagatggtattaatatattcacaaaaggcacaactgagatattggatcaattttatactatacactatgttagtgctcaaggat 39561921  T
Q  101 aatggataagagcagcttcctggaaagcatttccaatctaccttttccacactatataatgcatcacatacaacaactcacactcaaaccaacacattaa 200  Q
    ||       |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39561920 aa-------gagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaaccaacacattaa 39561828  T
Q  201 aaatattctttaatctcaatttcatctctctattttgagctacaaacataacaagatagattcttactctccattttcaatggatccatcgaaaacacct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39561827 aaatattctttaatctcaatttcatctctctattttgagctacaaacataacaagatagattcttactctccattttcaatggatccatcgaaaacacct 39561728  T
Q  301 gcatatgcaaacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaagtcggcaaaaaacatgtttgcaaggctgtatcttccaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39561727 gcatatgcaaacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaagtcggcaaaaaatatgtttgcaaggctgtatcttccaa 39561628  T
Q  401 caggaaacaacaaaagtattcaactcaacagcaaaaaagtttcaaccaaaaccgtacctttttgggacgagtcttttaatctagattgttcttgccccca 500  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39561627 caggaaacaacaaaagtattcaactcaatagcaaaaaaatttcaaccaaatccgtacctttttgggacgagtcttttaatctagattgttcttgccccca 39561528  T
Q  501 agaattcttggaaaatcttaaccaacaaagcctagtgttggagctaaggcaaaggaagatatgggggtc 569  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39561527 agaattcttggaaaatcttaaccaacaaaacctagtgttggagctaaggcaaaggaagatatgggggtc 39561459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 274 - 569
Target Start/End: Complemental strand, 39569124 - 39568829
Alignment:
Q  274 ttttcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaagtcggcaaaaa 373  Q
    ||||||||||||||||   | | |||||| |||||||||||||| |||||||| |||||||| ||||| |||||  ||||||   |||||||  | ||||    
T  39569124 ttttcaatggatccattccatatacctgcttatgcaaacttcagctgtgaactaagaataatacaagcccgaaatgttgaatctgtcaagtccacgaaaa 39569025  T
Q  374 acatgtttgcaaggctgtatcttccaacaggaaacaacaaaagtattcaactcaacagcaaaaaagtttcaaccaaaaccgtacctttttgggacgagtc 473  Q
    || ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||  ||||| |||||| | ||||| |||||||| |||||    
T  39569024 acttgtttgcaaggttgtatcttccaacaggaaacaacaaaagaattcaactaaacagcaaaagtgtttccaccaaatcagtacccttttgggatgagtc 39568925  T
Q  474 ttttaatctagattgttcttgcccccaagaattcttggaaaatcttaaccaacaaagcctagtgttggagctaaggcaaaggaagatatgggggtc 569  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||| ||||||||    
T  39568924 ttttaatctggattgttcttgcccccaagaattcttggaaaaccttaatcaacaaagcctagaggtggagctaaggcaaaggaagatgtgggggtc 39568829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 274 - 569
Target Start/End: Original strand, 39581349 - 39581644
Alignment:
Q  274 ttttcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaagtcggcaaaaa 373  Q
    ||||||||||||||||   | | | |||| |||||||||||||||| |||||||||||| |||||||| ||||| ||||||| | |||| ||  ||||||    
T  39581349 ttttcaatggatccatgccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtcaaatccacaaaaa 39581448  T
Q  374 acatgtttgcaaggctgtatcttccaacaggaaacaacaaaagtattcaactcaacagcaaaaaagtttcaaccaaaaccgtacctttttgggacgagtc 473  Q
    || | ||||| ||| | |||||||||||||||||||||||||| |||||||| ||||||||||  ||||| |||||| | || || |||||||| |||||    
T  39581449 acttatttgctaggttatatcttccaacaggaaacaacaaaagaattcaactaaacagcaaaagtgtttccaccaaatcagtgcccttttgggatgagtc 39581548  T
Q  474 ttttaatctagattgttcttgcccccaagaattcttggaaaatcttaaccaacaaagcctagtgttggagctaaggcaaaggaagatatgggggtc 569  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||||    
T  39581549 ttttaatctagattgttcttgcccccaagaattcttggaaaaccttaatcaacaaagcctagaggtggagctaaggcaaaggaagatatgggggtc 39581644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 274 - 569
Target Start/End: Complemental strand, 39566463 - 39566168
Alignment:
Q  274 ttttcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaagtcggcaaaaa 373  Q
    ||||| |||||||||||  | | | |||| |||||||||||||||| |||||||||||| |||||||| ||||| ||||||| | |||| ||  | ||||    
T  39566463 ttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgagaatcattcaagcccgaaatattgaatccgtcaaatctacgaaaa 39566364  T
Q  374 acatgtttgcaaggctgtatcttccaacaggaaacaacaaaagtattcaactcaacagcaaaaaagtttcaaccaaaaccgtacctttttgggacgagtc 473  Q
    || | ||||||||| | ||||||||||| |||||||||||||| |||||||| ||||||||||  ||||| |||||| | || || |||||||| |||||    
T  39566363 acttatttgcaaggttatatcttccaacgggaaacaacaaaagaattcaactaaacagcaaaagtgtttccaccaaatcagtgcccttttgggatgagtc 39566264  T
Q  474 ttttaatctagattgttcttgcccccaagaattcttggaaaatcttaaccaacaaagcctagtgttggagctaaggcaaaggaagatatgggggtc 569  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  39566263 ttttaatctagattgttcttgcccccaagaattcttggaaaaccttaatcaacaaagcctggtgttggagctaaggcaaaggaagatgtgggggtc 39566168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 273 - 569
Target Start/End: Original strand, 39584987 - 39585283
Alignment:
Q  273 attttcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaagtcggcaaaa 372  Q
    ||||||||||||||||||  | | ||| || |||||||||||||| ||||||||||||||||| |||||  |||||| |||||||||||| ||  | |||    
T  39584987 attttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaataatacaagccagaaacactgaattcatcaaatccacgaaa 39585086  T
Q  373 aacatgtttgcaaggctgtatcttccaacaggaaacaacaaaagtattcaactcaacagcaaaaaagtttcaaccaaaaccgtacctttttgggacgagt 472  Q
    ||| ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| ||||   |||| |||||| || |||| |||||| | ||||    
T  39585087 aacttgttttcaaggttgtatcttccaacaggaaacaacaaaagaattcaactcaacagtaaaagtatttctaccaaatccctacccttttggaatgagt 39585186  T
Q  473 cttttaatctagattgttcttgcccccaagaattcttggaaaatcttaaccaacaaagcctagtgttggagctaaggcaaaggaagatatgggggtc 569  Q
    |||||||| |||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  39585187 cttttaatttagattgttcatgcccccaggaattcttggacaatcttaatcaacaaagcctagtggtggagctgaggcaaaggaagatgtgggggtc 39585283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 277 - 569
Target Start/End: Complemental strand, 39571938 - 39571646
Alignment:
Q  277 tcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaagtcggcaaaaaaca 376  Q
    ||||||||||||||  | | | |||| |||| ||| ||||| || |||||||||||||| ||||| || ||||| ||||||||||||||  | || |||     
T  39571938 tcaatggatccatctcatataactgcttatgtaaatttcagctgcgaactgagaataatacaagctcgtaacatcgaattcatcaagtccacgaagaact 39571839  T
Q  377 tgtttgcaaggctgtatcttccaacaggaaacaacaaaagtattcaactcaacagcaaaaaagtttcaaccaaaaccgtacctttttgggacgagtcttt 476  Q
    | ||||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||||  ||||| |||||| | || || |||||||||||||||||    
T  39571838 tatttgcaaggttgtatcttccaacaggaaacgacaaaagaattcaactaaacagcaaaagtgtttccaccaaatcagtgcccttttgggacgagtcttt 39571739  T
Q  477 taatctagattgttcttgcccccaagaattcttggaaaatcttaaccaacaaagcctagtgttggagctaaggcaaaggaagatatgggggtc 569  Q
    |||| |||| || || ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  39571738 taatttagactgctcatgccctcaagaattcttggaaaaccttaatcaacaaagcctagtgttggagctaagacaaagaaagatatgggggtc 39571646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 310 - 569
Target Start/End: Original strand, 39574830 - 39575083
Alignment:
Q  310 aacttcagttgtgaactgagaataattcaagcacgaaacattgaattcatcaagtcggcaaaaaacatgtttgcaaggctgtatcttccaacaggaaaca 409  Q
    ||||||||||||||| ||||| |||| ||||| |||||||| ||||||||||||||  | |||||| ||||||||||| |||||||||||||||||||||    
T  39574830 aacttcagttgtgaattgagattaatacaagctcgaaacatcgaattcatcaagtccacgaaaaacttgtttgcaaggttgtatcttccaacaggaaaca 39574929  T
Q  410 acaaaagtattcaactcaacagcaaaaaagtttcaaccaaaaccgtacctttttgggacgagtcttttaatctagattgttcttgcccccaagaattctt 509  Q
    | ||||| |||||||||||| || |||| ||||| |||||| | || || |||||||| || ||||||||||| |||||||||||  |||||||||||||    
T  39574930 ataaaagaattcaactcaacggctaaaatgtttctaccaaatcagtgcccttttgggatgaatcttttaatcttgattgttcttgtgcccaagaattctt 39575029  T
Q  510 ggaaaatcttaaccaacaaagcctagtgttggagctaaggcaaaggaagatatgggggtc 569  Q
    ||      ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39575030 gg------ttaaccaacaaagcctagtgttggagctaaggcaaaggaagatgtgggggtc 39575083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 39566699 - 39566511
Alignment:
Q  1 tgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatgttagtgctcaaggat 100  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||        
T  39566699 tgcatagtttaagattaagatggtattaatatattcacaaagagcacaacttagatattggatcaattttatataatacactatgttagtgctcaa---- 39566604  T
Q  101 aatggataagagcagcttcctggaaagcatttccaatctaccttttccacactatataatgcatcacataca--acaactcacactcaaaccaaca 194  Q
       | |||||||||||||||||||||||||||||| | ||| |||| ||||||||||||| ||||| |||||  |||||||| |||||||| ||||    
T  39566603 ---gaataagagcagcttcctggaaagcatttccagtttactttttgcacactatataatacatcatatacaacacaactcaaactcaaacaaaca 39566511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 39560710 - 39560558
Alignment:
Q  1 tgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatgttagtgctcaaggat 100  Q
    |||||| || |||| |||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||| ||||        
T  39560710 tgcatgattcaagaataagttggtattaatatattcacaaaaggcacaactgagatactggatcaattttatacaatatactatgttagtgttcaa---- 39560615  T
Q  101 aatggataagagcagcttcctggaaagcatttccaatctaccttttccacactatataat 160  Q
        ||||||| || |||| |||||||||||||| || ||| |||||||||||| |||||    
T  39560614 ---agataagatcaacttcatggaaagcatttcctatttactttttccacactacataat 39560558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 39572119 - 39572030
Alignment:
Q  104 ggataagagcagcttcctggaaagcatttccaatctaccttttccacactatataatgcatcacatacaacaactcacactcaaaccaac 193  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||| |||||| |||||||| ||| ||||||||||||    
T  39572119 ggataagagcagcttcctgtaaagcatttccaatttactttttcaacactatataatacatcacctacaacaattcaaactcaaaccaac 39572030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 39581077 - 39581146
Alignment:
Q  1 tgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaatttt 70  Q
    |||||| || || |||||| |||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  39581077 tgcatgattcaatattaagttggtattaatatatgcacaaaaagcacaactgagatactagatcaatttt 39581146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 39581181 - 39581249
Alignment:
Q  121 tggaaagcatttccaatctaccttttccacactatataatgcatcacatacaacaactcacactcaaac 189  Q
    |||||||||||||||   ||| ||||||||||||||||||||||| |||||||||||| | ||||||||    
T  39581181 tggaaagcatttccacattactttttccacactatataatgcatcgcatacaacaacttaaactcaaac 39581249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 39572203 - 39572131
Alignment:
Q  1 tgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttata 73  Q
    |||||| | |||||||||| ||||| |||||||||| ||||| | |||||||||||| ||||  |||||||||    
T  39572203 tgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactgagatactggacaaattttata 39572131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 39584700 - 39584755
Alignment:
Q  2 gcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagata 57  Q
    ||||| |||||||||||| |||| |  |||||||||||||| ||||||||||||||    
T  39584700 gcatgatttaagattaagttggtgtccatatattcacaaaaggcacaactgagata 39584755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 39574561 - 39574603
Alignment:
Q  7 gtttaagattaagatggtattaatatattcacaaaaagcacaa 49  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  39574561 gtttaagattaatttggtattaaaatattcacaaaaagcacaa 39574603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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