View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_high_8 (Length: 521)
Name: NF5954_high_8
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 313865 - 314362
Alignment:
| Q |
1 |
cagccattggcataccctttaacatagggttacttaatgtctcaactgctgcatagaaagcatccatatctacatgtaaccaaatccttgaaaggtcgcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
313865 |
cagccattggcataccctttaacatagggttacttaatgtctcaactgctgcatagaaagcatccatatctacatgtaaccaaatccttgaaaggtcgcg |
313964 |
T |
|
| Q |
101 |
cgaagcttcaagttcaagaattcttttatcagcaatctggtatttgaaatgataaattaaataaggttttgaaaaccctaaattaagattaagatgtaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
313965 |
cgaagcttcaagttcaagaattcttttatcagcaatctggtatttgaaataataaattaaataaggttttgaaaaccctaaattaagattaagatgtaat |
314064 |
T |
|
| Q |
201 |
taaaatgaaatgaagaaggatggcatgttaccttttgataatgtgataaatcagagtgtgtaaggtttgaaaagtgaagacgcatgttttgaactttgta |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
314065 |
taaaatgaaatgaagacggatggcatgttaccttttgataatgtgataaatcagagtgtgtaaggtttgaaaagtgaagacgcatgttttgaactttgta |
314164 |
T |
|
| Q |
301 |
tttgataaaagactccttcctttcctcattctgaaaatatttggatcctttgctcatttcataaacaatcctttgtactttttctttgtcaacaccttcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
314165 |
tttgataaaagactccttcctttcctcattctgaaaatatttggatcctttgctcatttcataaacaatcctttgtactttttctttgtcaacaccttcc |
314264 |
T |
|
| Q |
401 |
attcctgctttcgcgctagtgtaaacggtgttgtaagactgccatcgattatcatcgcttccctccatcgacatcttctccttcacttgttgccgcgt |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
314265 |
attcctgctttcgcgctagtgtaaacggtgttgtaagactgccatcgattatcatcgcttccctccatcgacatcttctctttcacttgttgccgcgt |
314362 |
T |
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