View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5954_low_10 (Length: 520)
Name: NF5954_low_10
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 502
Target Start/End: Original strand, 13115617 - 13116110
Alignment:
| Q |
9 |
agcagagaccaaaagtagtgatgcaaaatttttggaatcaaaagtcgaaggaaaatttagagctgaaattcgtagctgcaagtaatcatgtatgcttttc |
108 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13115617 |
agcagagaccaaaagtagtgaagcagaattttcggaatcaaaagtcgaaggaaaatttggagctgaaattcgtagctgcaattaatcatgtatgcttttc |
13115716 |
T |
|
| Q |
109 |
ttgcagttcacacacttcaaatgtggaggactctctctgggaataagttgggctcacatccttggagatgcattttcagctttcaacttcgtcaccaaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
13115717 |
ttgcagttcacacacttcaaatgtggaggactctctgtgggaatgagttgggctcacatccttggagatgcattttcagcttttaacttcatcagcaaat |
13115816 |
T |
|
| Q |
209 |
ggagtcaaatactagctggccaagctccaccaaaatctcttcacaagcaaaatctcaccaaacctcaattctcattaaattctgtttctgacaatcccat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13115817 |
ggagtcaaatactagctggccaagctccaccaaaatctcttcacaagcaaaatctcacaaaacctcaattctcattaaattctgtttctgacaatcccat |
13115916 |
T |
|
| Q |
309 |
ttccatcaaaagggcaacatgtgttgaggaatattggcttgctactaaccacagtgatgtagctactcacacttttcacatcacttccaaccaacttcac |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13115917 |
ttccatcaaaagggcaacatgtgttgaggaatattggcttgctactaaccacagtgatgtagctactcacacttttcacatcacttccaaccaacttcac |
13116016 |
T |
|
| Q |
409 |
catttggtaataccatccacaacatctaacaatatcaaaacaaaatattttgaaattatttcagctatgatttggaaatgtatagcacaaataa |
502 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13116017 |
catttggtaacaccatccacaacatctaacaatatcaaaacaaaatattttgaaattatttcagctatgatttggaaatgtatagcgcaaataa |
13116110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 113 - 502
Target Start/End: Original strand, 46010844 - 46011242
Alignment:
| Q |
113 |
agttcacacacttcaaatgtggaggactctctctgggaataagttgggctcacatccttggagatgcattttcagctttcaacttcgtcaccaaatggag |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| | || ||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
46010844 |
agttcacattcttcaaatgtggaggactctcagtgggactgagctgggctcacattcttggagatgcattttcagctcgtaacttcatcaccaagtggag |
46010943 |
T |
|
| Q |
213 |
tcaaatactagctggccaagctccaccaaaatctcttcacaagcaaaatctcaccaaacctcaattctcattaaattctgtttctgacaatcccatttcc |
312 |
Q |
| |
|
||| | |||||||| |||||||||||||||||||| |||| || ||||||||| ||||||||||||| || |||||||||| ||| |||||||||||| |
|
|
| T |
46010944 |
tcacaccctagctggtcaagctccaccaaaatctctccacatgccaaatctcactaaacctcaattcttatcgaattctgtttatgataatcccatttcc |
46011043 |
T |
|
| Q |
313 |
atcaaaagggcaacatgtgttgaggaatattggcttgctactaaccacagtgatgtagctactcacacttttcacatcacttccaaccaacttcaccatt |
412 |
Q |
| |
|
|| |||||||||||| |||| ||||||||||| ||| | | | ||| |||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
46011044 |
attaaaagggcaacaacaattgaagaatattggctcgctgccactgatagttatgtagctactcacacttttcacatcacttccaaacaacttcatcatt |
46011143 |
T |
|
| Q |
413 |
tggtaataccatccacaacatc---------taacaatatcaaaacaaaatattttgaaattatttcagctatgatttggaaatgtatagcacaaataa |
502 |
Q |
| |
|
|| ||| | |||||||| || | || ||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46011144 |
tgttaacaacatccacatcaaccaatatcaatatcaataccaagacaaagtattttgaaattatttcagctatgatttggaaatgtataggacaaataa |
46011242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 91 - 502
Target Start/End: Original strand, 15923876 - 15924286
Alignment:
| Q |
91 |
taatcatgtatgcttttcttgcagttcacacacttcaaatgtggaggactctctctgggaataagttgggctcacatccttggagatgcattttcagctt |
190 |
Q |
| |
|
|||| ||||||| |||||||||||||||| ||||||||||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15923876 |
taattatgtatg-ttttcttgcagttcacgagtttcaaatgtgggggactctctgttggactaagttgggctcacatccttggagatgcattttcagctt |
15923974 |
T |
|
| Q |
191 |
tcaacttcgtcaccaaatggagtcaaatactagctggccaagctccaccaaaatctcttcacaagcaaaatctcaccaaacctcaattctcattaaattc |
290 |
Q |
| |
|
| || ||| |||||||||||||||| ||||||||||| ||| | | ||||||||||||||||| | |||||| ||||||||||||| || |||| |
|
|
| T |
15923975 |
ttaatttcatcaccaaatggagtcacatactagctggtcaatcccaaccaaaatctcttcacattccaaatcttgtcaaacctcaattcctatccaattt |
15924074 |
T |
|
| Q |
291 |
tgtttctgacaatcccatttccatcaaaagggcaacatg-tgttgaggaatattggcttgctactaaccacagtgatgtagctactcacacttttcacat |
389 |
Q |
| |
|
||||| ||| ||||| ||||||||||||| | || ||| ||||| |||||||||||||||| | || | || |||| ||| |||||| |||||||| |
|
|
| T |
15924075 |
tgtttttgataatcctatttccatcaaaaatg-aaaatgttgttggggaatattggcttgctgcaaatgattgttatgtccctagtcacacatttcacat |
15924173 |
T |
|
| Q |
390 |
cacttccaaccaacttcaccatttggtaataccatccacaacatctaacaatatcaaaacaaaatattttgaaattatttcagctatgatttggaaatgt |
489 |
Q |
| |
|
|||||| | |||||||||||||||||||| | || ||| | | || ||||| | | || || |||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
15924174 |
cacttctagccaacttcaccatttggtaaaaacaaccaaatctattaccaataccgatactaagtattttgaaattatttcagctacgatatggaaatgt |
15924273 |
T |
|
| Q |
490 |
atagcacaaataa |
502 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15924274 |
atagcacaaataa |
15924286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University