View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_12 (Length: 428)
Name: NF5954_low_12
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 5628520 - 5628109
Alignment:
| Q |
1 |
tcctcgacacttcaaacatgactacatcatctagaaaaaacaattcatatgttagaagatctttttccaattttgactttgaaagtttaatcgctttatt |
100 |
Q |
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| T |
5628520 |
tcctcgacactccaaacatgactatatcatcttaaaaaaacaattcataagttagaagattttttttcaattttgactttgaaagtttaatcgctttatt |
5628421 |
T |
|
| Q |
101 |
tttt---atnnnnnnnnnnnnnntagaataaaagaaatctatacccaccgtcaggttctttacttccaattcaatgtctgcatcaaataaaaggtgtaca |
197 |
Q |
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||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5628420 |
tttataaaaaaataaaataaaaatagaataaaagaaatctatacccaccgtcag-ttctttacttccaattcaatgtctgcatcaaataaaaggtgtgca |
5628322 |
T |
|
| Q |
198 |
tgaaattacaacttagctaagcatagccgccgtaatataatatcgttataaaactggaaccgtacactattggcttctagtctttgttgcaacatagaga |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5628321 |
tgaaattacaacttagctaagcatagccgccgtaatataatatcgttataaaactggaaccgtacactattggcttctagtctttgttgcaacacagaga |
5628222 |
T |
|
| Q |
298 |
acgtaggggaaaaaagaagagtagagacaagaaataataagataattttatattttttaataacttaacgtgtgtttggtttcctatttgctaccctgac |
397 |
Q |
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|| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
5628221 |
acatagggaaaaaaagaagag-agagacaagaaataataagataattttatattttttaataacttaacatgtgtttggtttcctatctgctaccctgac |
5628123 |
T |
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| Q |
398 |
tcgagttttccaca |
411 |
Q |
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|||||||||||||| |
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| T |
5628122 |
tcgagttttccaca |
5628109 |
T |
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