View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_14 (Length: 401)
Name: NF5954_low_14
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Complemental strand, 47180195 - 47179823
Alignment:
| Q |
13 |
tcatcaagttttaagggaaccaaatagctagaacctagaagaataaatttggcgttttttgaatannnnnnnnaggagaaatagaagctaggtaagctca |
112 |
Q |
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| T |
47180195 |
tcatcaagttttaagggaaccaaatagctagaacctagaagaataaatttggcgttttttgaatattttttt-aggagaaatagaagctaggtaagctca |
47180097 |
T |
|
| Q |
113 |
cagagatgaggttttcagggtgaatgactgaagtcatcacagtttcttttcatcttttgctggctgaattgactaccctatgttaacttttgaaattatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47180096 |
cagagatgaggttttcagggtgaatgactgaagtcatcacagtttcttttcatcttttgctggctgaattgactaccctatgttaacttttgaaattatt |
47179997 |
T |
|
| Q |
213 |
gaaagtacttgcaccctctttcttttgtcatcatacaaggagtggatgtgtgtgagtttttggtcattttccctatggctctcagcaccagtactcaata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47179996 |
gaaagtacttgcaccctctttcttttgtcatcatacaaggagtggatgtgtgtgagtttttggtcattttccctatagctctcagcaccagtactcaata |
47179897 |
T |
|
| Q |
313 |
atagtttaattctagaagtgctattaaatactacatgtatacagtgttcatttgcctctacactgttacaaagt |
386 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47179896 |
atagtttaattctagaagtactattaaatactacatgtatacagtgttcatttgcctctacactgttacaaagt |
47179823 |
T |
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