View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_15 (Length: 387)
Name: NF5954_low_15
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 40566998 - 40567351
Alignment:
| Q |
19 |
caaaccttcctaaactgttannnnnnncgttttgttcctgattttatcttgttgacaggcttagagaaaagactaagagattcgtgaaatgcttgagtga |
118 |
Q |
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| T |
40566998 |
caaaccttcctaaactgttatttttttcattttgttcctgattttatcttgttgacaggcttagagaaaagactaagagattcgtgaaatgcttgagtga |
40567097 |
T |
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| Q |
119 |
tttgcactcagctggttcctcatttatatatactcctagaaataaataaaatttacatttacatttacaagcagattataataatgctatttattgggtg |
218 |
Q |
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| T |
40567098 |
cttacactcagctggttcctcatttatatatactcctagaaataaataaaatttacatttacatttacaagcagattataataatgctatttattgggtg |
40567197 |
T |
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| Q |
219 |
catgaatgatattccctgtaaaaggatacaaacagttatgtaacgtttaaattagttagccaaagacacctaagtttcttatgatcataagttcatctct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40567198 |
catgaatgatattccctgtaaaaggatacaaacagttatgtaacgtttaaattagttagccaaagacacctaagtttcttatgatcataagttcatctct |
40567297 |
T |
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| Q |
319 |
gaactgagatatgatatagtcggaataacttgaagttgaaattggtctttctat |
372 |
Q |
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| T |
40567298 |
gaactgagatatgatatagtcggaataacttgaagttgaaattggtctttctat |
40567351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 9286734 - 9286828
Alignment:
| Q |
79 |
ttagagaaaagactaagagattcgtgaaatgcttgagtgatttgcactcagctggttcctcatttatatatactcctagaaataaataaaattta |
173 |
Q |
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| T |
9286734 |
ttagagagaaaactaagggatttgtgaaatgcttgagtgatttgcactcagctgatccttcatttctatacactcatagatgtaaatacaattta |
9286828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 12293659 - 12293580
Alignment:
| Q |
102 |
gtgaaatgcttgagtgatttgcactcagctggttcctcatttatatatactcctagaaataaataaaatttacatttaca |
181 |
Q |
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| T |
12293659 |
gtgaaatgcttgagtgatatgcactcagctgatccttcatttatgtatactcctagaaataaatacaatttacatttaca |
12293580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 12294127 - 12294091
Alignment:
| Q |
93 |
aagagattcgtgaaatgcttgagtgatttgcactcag |
129 |
Q |
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| T |
12294127 |
aagagatttgtgaaatgcttgagtgatatgcactcag |
12294091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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