View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_19 (Length: 343)
Name: NF5954_low_19
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 9935699 - 9935384
Alignment:
| Q |
22 |
gtctccaagataagtatgacctctatttgaccggtagaatctatcttcccgttgaacaaccattcccaaatgttgattattcaacaacattatcttcacc |
121 |
Q |
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| T |
9935699 |
gtctccaagataagtatgacctctatttgaccggtagaatctatcttcccgttgaacaaccattcccaaatgttgattattcaacaacattatcttcacc |
9935600 |
T |
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| Q |
122 |
ggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactaccatctccgtcaatgtcaacaacgatggcattagggttagcaattg |
221 |
Q |
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| T |
9935599 |
ggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactaccatctccgtcaatgtcaacaacgatggcattagggttagcaattg |
9935500 |
T |
|
| Q |
222 |
cggcaccaattgcagcaggtaatccgaaacccatagcaccaagtccaccggaagttaaccactgcctaggtctcttgtatttgtaaaattgagcagccca |
321 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9935499 |
cggcaccaattgcagcaggtaatccgaaacccattgcaccaagtccaccagaagttaaccactgcctaggtctcttgtatttgtagaattgagcagccca |
9935400 |
T |
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| Q |
322 |
catttgatgatgtcca |
337 |
Q |
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| T |
9935399 |
catttgatgttgtcca |
9935384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 77 - 337
Target Start/End: Complemental strand, 3473068 - 3472808
Alignment:
| Q |
77 |
acaaccattcccaaatgttgattattcaacaacattatcttcaccggaatattttccgctcttatagtagctaactcttgaacattcatcaaaaaactac |
176 |
Q |
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| T |
3473068 |
acaaccatacccaagtgttgattattcaacaacaatatcttaacagggagattctccaccttgatagtagccaattcctgaacattcatcataaaacttc |
3472969 |
T |
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| Q |
177 |
catctccgtcaatgtcaacaacgatggcattagggttagcaattgcggcaccaattgcagcaggtaatccgaaacccatagcaccaagtccaccggaagt |
276 |
Q |
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| T |
3472968 |
catcaccatcgatgtcaaccacaatagcgtcgggattggcaacagcagctcccatggcagccggcaatccaaatcccatagcgccaagaccagcagatgt |
3472869 |
T |
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| Q |
277 |
taaccactgcctaggtctcttgtatttgtaaaattgagcagcccacatttgatgatgtcca |
337 |
Q |
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| T |
3472868 |
caaccactgccttggtctcttgtacctataaaactgagcagcccacatctgatgttgtcca |
3472808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 9924800 - 9924712
Alignment:
| Q |
22 |
gtctccaagataagtatgacctctatttgaccggtagaatctatcttcccgttgaacaaccattcccaaatgttgattattcaacaaca |
110 |
Q |
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|||||||||||||||||||||| | || ||| ||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
9924800 |
gtctccaagataagtatgacctttgttggactggtagaatctatcctcccactgagtaaccattcccaaatgttaattattcaacaaca |
9924712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 26 - 337
Target Start/End: Complemental strand, 45477641 - 45477330
Alignment:
| Q |
26 |
ccaagataagtatgacctctatttgaccggtagaatctatcttcccgttgaacaaccattcccaaatgttgattattcaacaacattatcttcaccggaa |
125 |
Q |
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||||||||||||||| ||||||||| | |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |
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| T |
45477641 |
ccaagataagtatgagctctatttgccttgtagaatctatcctcccattgaacaaccatacccaaatgttgattattcaacaacaggatcttaaccggaa |
45477542 |
T |
|
| Q |
126 |
tattttccgctcttatagtagctaactcttgaacattcatcaaaaaactaccatctccgtcaatgtcaacaacgatggcattagggttagcaattgcggc |
225 |
Q |
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||| || ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||||| || || |||| ||||||||||| || || |
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| T |
45477541 |
gattctctactcttatagtagctaactcttgaacgttcatcataaaactaccatccccgtcaatatcaacgacaattgcatcagggttagcaacagcagc |
45477442 |
T |
|
| Q |
226 |
accaattgcagcaggtaatccgaaacccatagcaccaagtccaccggaagttaaccactgcctaggtctcttgtatttgtaaaattgagcagcccacatt |
325 |
Q |
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||| || |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||| ||||||| |
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| T |
45477441 |
accgatagcagcaggtaatccaaaacccatggcaccaagtccaccagaagttaaccactgcctaggtctcttatacttgtaaaactgagcagaccacatt |
45477342 |
T |
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| Q |
326 |
tgatgatgtcca |
337 |
Q |
| |
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||||| |||||| |
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| T |
45477341 |
tgatgctgtcca |
45477330 |
T |
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