View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5954_low_20 (Length: 336)
Name: NF5954_low_20
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 15213035 - 15212856
Alignment:
| Q |
20 |
gaactttacttcatcaatttctctcggagttatatggtgaattagttggtttaataggtattagaaaaagaaagatttccattgaaaactggaagtataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15213035 |
gaactttacttcatcaatttctctcggagttatatggtgaattagttggtttaataggtattagaaaaagaaagatttccattgaaaactggaagtataa |
15212936 |
T |
|
| Q |
120 |
actttgtttatattcaattaatcatactgttcctgannnnnnnnagctgctttagcagccatcaaaacctcggaattgaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15212935 |
actttgtttatattcaattaatcatactgttcctgattttttttagctgctttagcagccatcaaaacctcggaattgaa |
15212856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 15212857 - 15212824
Alignment:
| Q |
290 |
aacacattgtatgtaaccacattcgttcatctca |
323 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
15212857 |
aacacattgtatgcaaccacattcgttcatctca |
15212824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University