View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_22 (Length: 334)
Name: NF5954_low_22
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_22 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 25534757 - 25534439
Alignment:
| Q |
16 |
atgatggagggtggtctcaaggtggttggttcgattacttgattaagaatggtccaactcaggtcgaactttgaaaaaagaagaggaagaatgatgaatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534757 |
atgatggagggtggtctcaaggtggttggttcgattacttgattaagaatggtccaactcaggtcgaactttgaaaaaagaagaggaagaatgatgaatc |
25534658 |
T |
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| Q |
116 |
aaaggattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactaagctacaccctaagcatattttgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25534657 |
aaaggattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactgagctacaccctaagcatattttgt |
25534558 |
T |
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| Q |
216 |
ctttgtacatcaatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagcttctatgcccttttagatccaaacaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534557 |
ctttgtacatcaatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagcttctatgcccttttagatccaaacaa |
25534458 |
T |
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| Q |
316 |
acattttgtgatatttgct |
334 |
Q |
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||||||||||||||||||| |
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| T |
25534457 |
acattttgtgatatttgct |
25534439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 54 - 323
Target Start/End: Complemental strand, 25526710 - 25526446
Alignment:
| Q |
54 |
ttgattaagaatggtccaactcaggtcgaactttgaaaaaagaagaggaagaatgatgaatcaaagg-attctgaatccaatcccaaaaggaaagcacta |
152 |
Q |
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| T |
25526710 |
ttgattaagaatggtccaactcggatcgaactttgaaataagaaga------atgatgaatcaaagggattctgaatccaatcccaaaaggaaagcacta |
25526617 |
T |
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| Q |
153 |
catcctaacatttaacagtaggacattttacataaactaagctacaccctaagcatattttgtctttgtacatcaatatttttgggggtctttaaatttt |
252 |
Q |
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| T |
25526616 |
catcctaacatttaacagtaggacattttacataaactaagctacaccctaagcatattttgtctttgtacatcaatatttttgggggtctttaaatttt |
25526517 |
T |
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| Q |
253 |
tcagtgaatcctatattctgttctgtccaattgtagcttctatgcccttttagatccaaacaaacattttg |
323 |
Q |
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| T |
25526516 |
tcagtgaatcctatattctgttctgtccaattgtagcttctatgcccttttagatccaaacaaacattttg |
25526446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 25515697 - 25515864
Alignment:
| Q |
13 |
aaaatgatggagggtggtctcaaggtggttggttcgattacttgattaagaatggtccaactcaggtcgaactttgaaaaaagaagaggaagaatgatga |
112 |
Q |
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|||||| |||||| |||||||||||||| | || ||| |||||||||||||||||| ||||| | || |||||||||||| | | ||| || ||||| |
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| T |
25515697 |
aaaatggtggaggctggtctcaaggtggattgtatgatgacttgattaagaatggtcaaactcggatcacactttgaaaaaa--ataagaacaaagatga |
25515794 |
T |
|
| Q |
113 |
atcaaag-gattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacatttt |
181 |
Q |
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|||| || |||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| |
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| T |
25515795 |
atcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacatttaacagtatgacatttt |
25515864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 334
Target Start/End: Original strand, 25515876 - 25515988
Alignment:
| Q |
226 |
caatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagctt----ctatgcccttttagatccaaacaaacattt |
321 |
Q |
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||||||||||| |||||| ||| ||||| | ||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||| | | |
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| T |
25515876 |
caatatttttgagggtctgtaattttttaaatgaatcctatagtctgttctgtccaaatgtagctagctactatgccctttcagatccaaacaaaattgt |
25515975 |
T |
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| Q |
322 |
tgtgatatttgct |
334 |
Q |
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||||||||||||| |
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| T |
25515976 |
tgtgatatttgct |
25515988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 25541048 - 25540969
Alignment:
| Q |
255 |
agtgaatcctatattctgttctgtccaattgtagcttctatgcccttttagatccaaacaaacattttgtgatatttgct |
334 |
Q |
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|||||||||||| ||||||||||| ||||| ||| ||||||| ||| ||||||||| |||| | |||||||||||||| |
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| T |
25541048 |
agtgaatcctattgtctgttctgtcagattgttgctactatgccatttcagatccaaataaacttgttgtgatatttgct |
25540969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 181
Target Start/End: Complemental strand, 25541120 - 25541089
Alignment:
| Q |
150 |
ctacatcctaacatttaacagtaggacatttt |
181 |
Q |
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| T |
25541120 |
ctacatcctaacatttaacagtaggacatttt |
25541089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 7946725 - 7946623
Alignment:
| Q |
89 |
aaaaaagaagaggaagaatgatgaatcaaagg-attctgaatccaatcccaaaaggaaagcactacatcctaa-catttaacagtaggacattttacata |
186 |
Q |
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||||| ||| || ||||| ||||||||||||| || |||| |||||||| ||||| ||| ||||| ||||||| ||||||| |||||||||||||||| | |
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| T |
7946725 |
aaaaatgaaaagaaagaaagatgaatcaaagggatcctgattccaatccaaaaagaaaatcactaaatcctaaacatttaatagtaggacattttacaca |
7946626 |
T |
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| Q |
187 |
aac |
189 |
Q |
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||| |
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| T |
7946625 |
aac |
7946623 |
T |
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