View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_25 (Length: 290)
Name: NF5954_low_25
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 36196607 - 36196475
Alignment:
| Q |
18 |
aatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196607 |
aatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtc |
36196508 |
T |
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| Q |
118 |
acttttgctaaatagtatagcatattgtagctg |
150 |
Q |
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| T |
36196507 |
acttttgctaaatagtatagcatattgtagctg |
36196475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 36196442 - 36196352
Alignment:
| Q |
183 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatatt |
273 |
Q |
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| T |
36196442 |
atattaacttggagtgcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatatt |
36196352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 36209731 - 36209598
Alignment:
| Q |
18 |
aatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtc |
117 |
Q |
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|||||| |||||||||||||||||||||||| |||||||| ||| ||| | |||| |||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
36209731 |
aatttcctctgtggttctttaaagggagggaagaattcaccttcctctctaataagatggtttgaactatgtttggtatggttggttctgttaacaagtc |
36209632 |
T |
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| Q |
118 |
act-tttgctaaatagtatagcatattgtagctg |
150 |
Q |
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| | |||||||||||||||| ||||||||||||| |
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| T |
36209631 |
attgtttgctaaatagtataacatattgtagctg |
36209598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 36184334 - 36184218
Alignment:
| Q |
30 |
ggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtcacttttgctaaa |
129 |
Q |
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|||||||| |||||||| |||||| | ||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
36184334 |
ggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaactatgtttggtatggttggttctgttaacatgtcacttttgctaaa |
36184235 |
T |
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| Q |
130 |
tagtatagcatattgta |
146 |
Q |
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||||||| ||||||||| |
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| T |
36184234 |
tagtataacatattgta |
36184218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 36188121 - 36188033
Alignment:
| Q |
183 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaata |
271 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
36188121 |
atattaacttggagtgcaaggctatggtttgacctgataaataattgtataattctgaagtcttttgtactatgtttgaaatctcaata |
36188033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 36184179 - 36184089
Alignment:
| Q |
185 |
attaacttggagggcaaggctatgcttt-gacctgataaataattgtataa-ttgtaaaggcttttgtactatgtttgaaatctcaatatt |
273 |
Q |
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| T |
36184179 |
attaactttgagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatatt |
36184089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 36188290 - 36188158
Alignment:
| Q |
18 |
aatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttc---tgttaacaa |
114 |
Q |
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|||||| ||||||| ||||||||||||||| ||||||||| ||| ||| | |||||||||||||||||| |||||| |||||| ||| ||||||||| |
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| T |
36188290 |
aatttcctctgtggctctttaaagggaggggggaattcaccttcctctctaataaaatggtttgaactaggtttggtatggtttgttctgttgttaacaa |
36188191 |
T |
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| Q |
115 |
gtca-cttttgctaaatagtatagcatattgta |
146 |
Q |
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|||| |||||||||||||||| ||||||||| |
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| T |
36188190 |
gtcatggtttgctaaatagtataacatattgta |
36188158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 36209565 - 36209512
Alignment:
| Q |
183 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataatt |
236 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36209565 |
atattaacttggagtgcaaggctatgctttgacctgataaataattgtataatt |
36209512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 36200497 - 36200418
Alignment:
| Q |
38 |
aaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtc |
117 |
Q |
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|||| ||| ||||||||||||||| ||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||| |
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| T |
36200497 |
aaagagagagaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtc |
36200418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 36201811 - 36201749
Alignment:
| Q |
198 |
gcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttg |
260 |
Q |
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| T |
36201811 |
gcaaggctatgttttaaccagataaataattttgtaattgtataggcttttgtacgatgtttg |
36201749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 36214316 - 36214245
Alignment:
| Q |
191 |
ttggagggcaaggctatgctttgacctgataaataattgtataattgtaaag--gcttttgtactatgtttg |
260 |
Q |
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|||||| | ||| ||||| ||||||||||||||||||| | ||||||||| | |||||||||||||||||| |
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| T |
36214316 |
ttggagtgtaagtctatgttttgacctgataaataattatgtaattgtaagggcgcttttgtactatgtttg |
36214245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 36203209 - 36203149
Alignment:
| Q |
200 |
aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttg |
260 |
Q |
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||||||||| ||| | |||||||||||||| |||||||| | ||||||||||||| |||| |
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| T |
36203209 |
aaggctatgtttttaactgataaataattgcgtaattgtacaagcttttgtactatttttg |
36203149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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