View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5954_low_27 (Length: 270)
Name: NF5954_low_27
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 3654231 - 3653978
Alignment:
| Q |
1 |
aagttgggctcgaatctcatattaaaaa-gttgtgcttgaatcccaccccaaaatgtttagacacttttgtgaataagatccaaatgaatttgttataaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3654231 |
aagttgggctcgaatctcatattaaaaaagttgtgcttgaatcccaccc-aaaatgtttagacacttttgtgaataagatccaaatgaatttgttataaa |
3654133 |
T |
|
| Q |
100 |
catcattaaattttattgcactattcattaataattctcacatttctattcgtgaataaagaaagtacataatatttttaccacataaaaaagattatga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3654132 |
catcattaaattttattgcactattcattaataattctcacatttctattcgtgaataaagaaagtacataatatttttaccacataaaaaagattatga |
3654033 |
T |
|
| Q |
200 |
aacatgatgtttgaacctctaatgcatgtcactcgtgtagcacacgggtagataa |
254 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3654032 |
aacatgatgtttgaacctctaatgcacgtcactcgtgtagcacacgggtagataa |
3653978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University