View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_3 (Length: 744)
Name: NF5954_low_3
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 41825157 - 41824831
Alignment:
| Q |
10 |
aagaatatcattaactcttttataccttttgttcaaatcattgaacttgtcttcacattgttgaggtgaaacatagtaccccttttccatcattcctttg |
109 |
Q |
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| T |
41825157 |
aagaatatcattaactcttttataccttttgttcaaatcattgaacttgtcttcacattgttgaggtgaaacatagtaccctttttccatcattcctttg |
41825058 |
T |
|
| Q |
110 |
gaaactgatttccatttccctttcttttgtaataaaccattagctttctttttatcagcacttaattctgaagtaccagcttcatcaccaatgtaataaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41825057 |
gaaactgatttccatttccctttcttttgtaataaaccattagctttctttttatcagcacttaattctgaagtaccagcttcatcaccaatgtaataaa |
41824958 |
T |
|
| Q |
210 |
cagccattattaagagtcttaccattgtatctgtccatttcattctatgccatggtgatccttttctttttgggtcaccaacagaggtttcatctgctcc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41824957 |
cagccattattaagagtcttaccattgtatctgtccatttcattctatgccatggtgatccttttctttttgggtcaccaacagaggtttcatctgctcc |
41824858 |
T |
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| Q |
310 |
aaaacatggttcatcttcatcactgag |
336 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
41824857 |
aaaacatggttcatcttcatcactgag |
41824831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 389 - 690
Target Start/End: Complemental strand, 41824781 - 41824481
Alignment:
| Q |
389 |
gggtagccttgttttattgattgatgaggttgatcataggaaaccatttggtgatgatgcaaagtgtgaggattttgatggttttgttgttgttttgaag |
488 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41824781 |
gggtagccttgtttgattgattgatgaggttgatcataggaaaccatttggtgatgatgcaaagtgtgaggattttgatggttttgttgttgttttgaag |
41824682 |
T |
|
| Q |
489 |
ggttttctactcctagaaatccattattgatgtttggaaatattccaccacctagtccattggattccatcaagactagttcaaaaatatttgtttatgc |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41824681 |
ggttttctactcctagaaatccattattgatgtttggaaatattccaccacctagtccattggattccatcaagactagttcaaaaatatttgtttaagc |
41824582 |
T |
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| Q |
589 |
ctagcaagattacctaaacaannnnnnnnatacaatctcggtactataaaatttagaaaaattgaataagaaacacttcaaaaggggaggaaacaatttg |
688 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41824581 |
ctagcaagattacctaaacaa-tttttttatacaatctcggtactataaaatttagaaaaattgaataagaaacacttcaaaaggggaggaaacaatttg |
41824483 |
T |
|
| Q |
689 |
ct |
690 |
Q |
| |
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|| |
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|
| T |
41824482 |
ct |
41824481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 26920131 - 26920450
Alignment:
| Q |
14 |
atatcattaactcttttataccttttgttcaaatcattgaacttgtcttcacattgttgaggtgaaacatagtaccccttttccatcattcctttggaaa |
113 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |||| ||||||||||| | | |||| |
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| T |
26920131 |
atatcattcactctcttataccttttattcaaatcattaaacttatcttcacattgttgaggtgacacataaaaccctttttccatcatagcccttgaaa |
26920230 |
T |
|
| Q |
114 |
ctgatttccatttccctttcttttgtaataaaccattagctttctttttatcagcacttaattc-tgaagtaccagcttcatcaccaatgtaataaacag |
212 |
Q |
| |
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| |||||||| || || ||||| ||||| |||||| ||| || || |||| | | | | | | | || ||||||||||||||||||||||||||||| |
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| T |
26920231 |
cagatttccactttcccttcttctgtaacaaaccactagactttttcttatttgga-tcagtcccttcagaaccagcttcatcaccaatgtaataaacag |
26920329 |
T |
|
| Q |
213 |
ccattattaagagtcttaccattgtatctgtccatttcattctatgccatggtgatccttttctttttgggtcaccaacagaggtttcatctgctccaaa |
312 |
Q |
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||||||| || || |||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| ||||| |||| || ||| ||| |
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| T |
26920330 |
ccattatcaatagccttaccattgtatcagtccatttcattctttgccatggtgaaatcttcctttttgggtcaccaccagagctttcttcagctggaaa |
26920429 |
T |
|
| Q |
313 |
acatggttcatcttcatcact |
333 |
Q |
| |
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| |||||||||||||||||| |
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| T |
26920430 |
atttggttcatcttcatcact |
26920450 |
T |
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