View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5954_low_31 (Length: 251)

Name: NF5954_low_31
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5954_low_31
NF5954_low_31
[»] chr4 (8 HSPs)
chr4 (10-241)||(30426904-30427136)
chr4 (53-119)||(32737354-32737422)
chr4 (118-185)||(31908728-31908795)
chr4 (118-216)||(51944714-51944812)
chr4 (122-186)||(42680651-42680715)
chr4 (149-233)||(42881045-42881129)
chr4 (118-178)||(46548648-46548708)
chr4 (122-224)||(48647033-48647136)
[»] chr8 (8 HSPs)
chr8 (118-224)||(32238222-32238327)
chr8 (118-185)||(36886215-36886282)
chr8 (117-190)||(19718367-19718440)
chr8 (122-185)||(17642363-17642426)
chr8 (122-217)||(36274585-36274680)
chr8 (124-216)||(1221444-1221537)
chr8 (122-186)||(18844212-18844276)
chr8 (136-224)||(24937599-24937687)
[»] chr2 (2 HSPs)
chr2 (53-119)||(21995836-21995903)
chr2 (146-224)||(17821836-17821914)
[»] chr5 (5 HSPs)
chr5 (122-214)||(35817373-35817465)
chr5 (122-185)||(13091203-13091266)
chr5 (122-236)||(17465251-17465365)
chr5 (138-215)||(9589514-9589591)
chr5 (138-215)||(14967537-14967614)
[»] chr3 (6 HSPs)
chr3 (118-198)||(46868527-46868607)
chr3 (11-91)||(52058709-52058789)
chr3 (118-186)||(26409683-26409751)
chr3 (11-43)||(27102836-27102868)
chr3 (118-178)||(52458008-52458068)
chr3 (52-123)||(54819796-54819867)
[»] chr1 (5 HSPs)
chr1 (56-119)||(2665391-2665456)
chr1 (125-189)||(29852238-29852302)
chr1 (122-233)||(34100718-34100829)
chr1 (122-179)||(20280511-20280568)
chr1 (64-117)||(51229782-51229835)
[»] chr6 (6 HSPs)
chr6 (118-193)||(24215301-24215376)
chr6 (122-216)||(31644432-31644526)
chr6 (144-225)||(20469049-20469130)
chr6 (11-43)||(1339506-1339538)
chr6 (11-43)||(24159705-24159737)
chr6 (122-206)||(32430213-32430297)
[»] chr7 (1 HSPs)
chr7 (52-92)||(31311518-31311558)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 30426904 - 30427136
Alignment:
Q  10 ctatttatcaaaagtgtcggcgaaataaaatttannnnnnnn-gaatttttattcttcataataaagaatattgatcatttttacgataaatgtaaaaat 108  Q
    |||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30426904 ctatttatcaaaagtgtcagcgaaataaaatttatttttttttgaatttttattcttcataataaagaatattgatcatttttacgataaatgtaaaaat 30427003  T
Q  109 ttagtatgatttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacc 208  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30427004 ttagtatgatttttaaaatataaaattcgacaaacaactttttatttcaaaaatatgattgttaatttatatattttgaaagcaaatgtaccaatacacc 30427103  T
Q  209 tcaatttataagtgtattatagaagctcctttg 241  Q
    |||||||||||||||||||||||||||||||||    
T  30427104 tcaatttataagtgtattatagaagctcctttg 30427136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 32737422 - 32737354
Alignment:
Q  53 aatttttattcttcataataaagaatattgatca-tttttacgataaa-tgtaaaaatttagtatgatt 119  Q
    ||||||||||  |||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  32737422 aatttttattactcataatagagaatattgattagtttttacgataaaatgtaaaaatttagtatgatt 32737354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 31908728 - 31908795
Alignment:
Q  118 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagatttt 185  Q
    |||||||||||||||  || ||||| |||||||||||||| |||  |||| ||||||||||| |||||    
T  31908728 tttttaaaatataaatatcaacaaatagctttttatttcataaaattgatagttaatttataaatttt 31908795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 51944714 - 51944812
Alignment:
Q  118 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaattta 216  Q
    |||||||||||||||   ||| ||| | || ||||||||| |||  ||||  |||||||||| ||||   ||||||| |||||||||||||||||||||    
T  51944714 tttttaaaatataaatgccgataaataactatttatttcataaaattgatcattaatttataaatttatgaagcaaaagtaccaatacacctcaattta 51944812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 42680715 - 42680651
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttg 186  Q
    |||||||||||  | |||||| |||||||||||||| |||  |||| ||||||||||| ||||||    
T  42680715 taaaatataaatattgacaaatagctttttatttcataaaagtgatcgttaatttataaattttg 42680651  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 42881129 - 42881045
Alignment:
Q  149 tttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttataagtgtattatagaag 233  Q
    ||||||||| |||  |||||||||||||||||||||   ||| ||| |||||  |||||| ||||||| |||||||  |||||||    
T  42881129 tttatttcataaaattgattgttaatttatagatttaagaagtaaaagtaccggtacaccacaatttacaagtgtaccatagaag 42881045  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 46548648 - 46548708
Alignment:
Q  118 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttat 178  Q
    |||||||||||||||| |||| | ||| || |||||| |||||| ||||||||||| ||||    
T  46548648 tttttaaaatataaaagtcgatagacatctctttattacaaaaaaatgattgttaacttat 46548708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 48647136 - 48647033
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttca-aaaatatgattgttaatttatagattt-tgaaagcaaatgtaccaatacacctcaatttataa 219  Q
    |||||||||||  | |||||| || | ||||||||| |||| ||||| ||||||||||| | || ||||| |||| |||||||||||||||| ||||| |    
T  48647136 taaaatataaatgttgacaaatagttatttatttcacaaaaaatgatcgttaatttataaaattatgaaa-caaaagtaccaatacacctcattttatga 48647038  T
Q  220 gtgta 224  Q
    |||||    
T  48647037 gtgta 48647033  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 32238222 - 32238327
Alignment:
Q  118 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttat 217  Q
    |||||||||||||||| |||||||| | ||||| |||||| ||| ||||| ||||||||||| |||| |||| |||  ||||||||||||||||||||||    
T  32238222 tttttaaaatataaaagtcgacaaataactttt-atttcataaaaatgatcgttaatttataaatttagaaaacaagagtaccaatacacctcaatttat 32238320  T
Q  218 aagtgta 224  Q
     ||||||    
T  32238321 gagtgta 32238327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 36886282 - 36886215
Alignment:
Q  118 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagatttt 185  Q
    |||||||||||||||  || ||||| |||| ||||||||||||| ||||| ||||||||||| |||||    
T  36886282 tttttaaaatataaatatcaacaaatagctctttatttcaaaaaaatgatagttaatttatatatttt 36886215  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 19718440 - 19718367
Alignment:
Q  117 atttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaag 190  Q
    ||||||||||||||||  || ||||| |||| ||||||||| ||| || || ||||||||||||||||| ||||    
T  19718440 atttttaaaatataaatatcaacaaatagctctttatttcataaaaataatagttaatttatagatttttaaag 19718367  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 17642363 - 17642426
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagatttt 185  Q
    |||||||||||  || ||||| |||||||||||||| ||| ||||| ||||||||||| |||||    
T  17642363 taaaatataaatatcaacaaatagctttttatttcataaaaatgatagttaatttataaatttt 17642426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 36274680 - 36274585
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttat 217  Q
    |||||||||||  ||||| || | || ||||||||| |||  |||| ||||||||||| |||| | ||||||  |||||| |||||||||||||||    
T  36274680 taaaatataaatgtcgacgaataactatttatttcataaaattgatcgttaatttatatatttaggaagcaagagtaccagtacacctcaatttat 36274585  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 1221537 - 1221444
Alignment:
Q  124 aaatataaaattcgacaaacagctttttatttcaaaaatat-gattgttaatttatagattttgaaagcaaatgtaccaatacacctcaattta 216  Q
    |||||||||| | || ||| | |||||||||||| ||| || ||| |||||||||||| ||| |||| |||  | |||||||||||||||||||    
T  1221537 aaatataaaagttgaaaaatatctttttatttcataaaaattgatcgttaatttatagctttagaaaacaatagaaccaatacacctcaattta 1221444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 18844276 - 18844212
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttg 186  Q
    |||||||||||  | |||||| |||||||||||||| ||| ||||| |||| |||||| ||||||    
T  18844276 taaaatataaatattgacaaatagctttttatttcataaaaatgatcgttattttataaattttg 18844212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 24937687 - 24937599
Alignment:
Q  136 cgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttataagtgta 224  Q
    ||||||| | || ||||||||| |||  ||||||||||| |||| ||||   |||||   |||||||||||||| ||||||||||||||    
T  24937687 cgacaaataactatttatttcataaaattgattgttaatgtataaatttaagaagcaggagtaccaatacaccttaatttataagtgta 24937599  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 21995903 - 21995836
Alignment:
Q  53 aatttttattcttcataataaagaatattgatcatttttacgat-aaatgtaaaaatttagtatgatt 119  Q
    ||||||||||  |||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  21995903 aatttttattactcataatagagaatatcgattatttttacgatgaaatgtaaaaatttagtatgatt 21995836  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 17821836 - 17821914
Alignment:
Q  146 ctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttataagtgta 224  Q
    |||||||||||| |||  |||||||||||  ||| |||| | ||||||  |||||||||||||| ||||||| ||||||    
T  17821836 ctttttatttcataaaattgattgttaatgcataaatttaggaagcaagagtaccaatacaccttaatttatgagtgta 17821914  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 35817465 - 35817373
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatt 214  Q
    |||||||||||  || ||||| ||| |||||||||| ||| || || ||||||| ||||||||| |||||||| ||||| |||||||| ||||    
T  35817465 taaaatataaatatcaacaaatagcattttatttcataaaaattatagttaattgatagatttttaaagcaaaagtaccgatacaccttaatt 35817373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 13091203 - 13091266
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagatttt 185  Q
    |||||||||||  || ||||| |||||||||||||| ||| ||||| ||||||||||| |||||    
T  13091203 taaaatataaatatcaacaaatagctttttatttcataaaaatgatagttaatttataaatttt 13091266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 17465365 - 17465251
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttga-aagcaaatgtaccaatacacctcaatttataag 220  Q
    ||||||||||||||||| ||| |||| |||||| ||  || ||||| ||||| ||||  ||||| | ||| || ||||||| |||||||||||||  |||    
T  17465365 taaaatataaaattcgataaatagctatttattccatgaaaatgatcgttaaattatt-attttaagaaggaagtgtaccactacacctcaatttgcaag 17465267  T
Q  221 tgtattatagaagctc 236  Q
    ||||| ||||||||||    
T  17465266 tgtatcatagaagctc 17465251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 9589514 - 9589591
Alignment:
Q  138 acaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaattt 215  Q
    ||||| |||||||||||||| ||| ||||| ||||||||||| |||||  ||| ||  ||||| |||||||| |||||    
T  9589514 acaaatagctttttatttcataaaaatgatagttaatttataaatttttgaagtaagagtaccgatacaccttaattt 9589591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 14967537 - 14967614
Alignment:
Q  138 acaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaattt 215  Q
    ||||| |||||||||||||| ||| ||||| ||||||||||| |||||  ||| ||  ||||| |||||||| |||||    
T  14967537 acaaatagctttttatttcataaaaatgatagttaatttataaatttttgaagtaagagtaccgatacaccttaattt 14967614  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 46868607 - 46868527
Alignment:
Q  118 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgta 198  Q
    |||||| |||| ||||||||||||| |||| ||||||||| ||| || ||  ||||||||| ||||| |||||||||||||    
T  46868607 tttttacaatacaaaattcgacaaatagctctttatttcataaaaataatcattaatttattgatttagaaagcaaatgta 46868527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 52058789 - 52058709
Alignment:
Q  11 tatttatcaaaagtgtcggcgaaataaaatttannnnnnnngaatttttattcttcataataaagaatattgatcattttt 91  Q
    |||||||||||||||||| ||||||||||||||        |||||||||||  ||||||| |||| ||||||| ||||||    
T  52058789 tatttatcaaaagtgtcgacgaaataaaatttaatttttttgaatttttattactcataatgaagattattgattattttt 52058709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 26409751 - 26409683
Alignment:
Q  118 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttg 186  Q
    |||| ||||||||||  | |||||| | |||||||||||| ||| ||||| ||||||||||| ||||||    
T  26409751 ttttcaaaatataaatattgacaaataactttttatttcataaaaatgatcgttaatttataaattttg 26409683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 27102868 - 27102836
Alignment:
Q  11 tatttatcaaaagtgtcggcgaaataaaattta 43  Q
    |||||||||||||||||| ||||||||||||||    
T  27102868 tatttatcaaaagtgtcgacgaaataaaattta 27102836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 52458068 - 52458008
Alignment:
Q  118 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttat 178  Q
    |||||||||||||||| |||| ||||| || |||||| || ||| ||||||||||| ||||    
T  52458068 tttttaaaatataaaagtcgataaacatctctttattacataaaaatgattgttaacttat 52458008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 54819796 - 54819867
Alignment:
Q  52 gaatttttattcttcataataaagaatattgatcatttttacgataaat-gtaaaaatttagtatgattttta 123  Q
    |||||||||||  ||||||||| |||||| ||| ||||| | ||||||  |||||||||||||||||||||||    
T  54819796 gaatttttattactcataataacgaatatagattatttt-aggataaaacgtaaaaatttagtatgattttta 54819867  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 2665391 - 2665456
Alignment:
Q  56 ttttattcttcataataaagaatattgatca-tttttacgataaatgtaaaa-atttagtatgatt 119  Q
    |||||||  |||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||    
T  2665391 ttttattactcataatagagaatattgattattttttacgataaatgtaaaatatttagtatgatt 2665456  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 29852302 - 29852238
Alignment:
Q  125 aatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaa 189  Q
    ||||||||| |||||||| | || ||||||||| ||| |||||||||||||||| ||||| ||||    
T  29852302 aatataaaagtcgacaaataactatttatttcataaaaatgattgttaatttattgatttagaaa 29852238  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 34100829 - 34100718
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttataagt 221  Q
    |||||||||||  |||||||| | || ||||||||| |||  |||| |||| |||||||||||   ||||||  |||||  |||||||||||||| ||||    
T  34100829 taaaatataaatgtcgacaaataactatttatttcataaaattgatcgttagtttatagatttatgaagcaatagtaccggtacacctcaatttacaagt 34100730  T
Q  222 gtattatagaag 233  Q
    |||  |||||||    
T  34100729 gtaccatagaag 34100718  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 20280511 - 20280568
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttata 179  Q
    |||||||||||  | |||||| | |||||||||||| ||| |||||||||||||||||    
T  20280511 taaaatataaatattgacaaataactttttatttcataaaaatgattgttaatttata 20280568  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 51229835 - 51229782
Alignment:
Q  64 ttcataataaagaatattgatcatttttacgataaatgtaaaaatttagtatga 117  Q
    |||||||||| ||| ||||||  ||||||| ||||||||||||| |||||||||    
T  51229835 ttcataataatgaacattgatattttttacaataaatgtaaaaaattagtatga 51229782  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 24215301 - 24215376
Alignment:
Q  118 tttttaaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaa 193  Q
    ||||||||||||||||  ||| ||| || | ||||||||| ||| |||||||||||||| |||||||  |||||||    
T  24215301 tttttaaaatataaaagacgataaatagttctttatttcataaaaatgattgttaatttttagatttaaaaagcaa 24215376  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 31644526 - 31644432
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaattta 216  Q
    |||||||||||   ||||||| | || ||||||||| |||  ||||||||| |||||||||||   ||||||  ||||| |||||||||||||||    
T  31644526 taaaatataaatgccgacaaataactatttatttcataaaattgattgttagtttatagatttatgaagcaagagtaccgatacacctcaattta 31644432  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 20469130 - 20469049
Alignment:
Q  144 agctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaatacacctcaatttataagtgtat 225  Q
    |||| ||||||||| ||| ||||| |||||||||||||||||  ||| ||  |||||  ||||||| |||||||| ||||||    
T  20469130 agctctttatttcataaaaatgatagttaatttatagatttttgaagtaagagtacccgtacaccttaatttataggtgtat 20469049  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 1339506 - 1339538
Alignment:
Q  11 tatttatcaaaagtgtcggcgaaataaaattta 43  Q
    |||||||||||||||||| ||||||||||||||    
T  1339506 tatttatcaaaagtgtcgacgaaataaaattta 1339538  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 24159737 - 24159705
Alignment:
Q  11 tatttatcaaaagtgtcggcgaaataaaattta 43  Q
    |||||||||||||||||| ||||||||||||||    
T  24159737 tatttatcaaaagtgtcgacgaaataaaattta 24159705  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 32430297 - 32430213
Alignment:
Q  122 taaaatataaaattcgacaaacagctttttatttcaaaaatatgattgttaatttatagattttgaaagcaaatgtaccaataca 206  Q
    ||||||| |||| |||||||| | ||| |||||||| ||| || ||||||||||||| |||||   ||| ||||||| |||||||    
T  32430297 taaaatacaaaactcgacaaataacttattatttcataaaaataattgttaatttattgatttatgaagtaaatgtatcaataca 32430213  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 31311518 - 31311558
Alignment:
Q  52 gaatttttattcttcataataaagaatattgatcattttta 92  Q
    |||||||||||  |||||||||||||||||||| |||||||    
T  31311518 gaatttttattactcataataaagaatattgattattttta 31311558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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