View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_32 (Length: 250)
Name: NF5954_low_32
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_32 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 1578158 - 1578395
Alignment:
| Q |
13 |
aaaatagactatcaattctctccagttcctttgagtttgctttactcgaagctgaaaaatcattacacccatacaattagaacacgcaacagttaactta |
112 |
Q |
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| T |
1578158 |
aaaatagactatcaattctctccagttcctttgagtttgctttactcgaagctgaaaaatcattacacccatacaattagaacacgcaacagttaactta |
1578257 |
T |
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| Q |
113 |
ccacttcaaacgtgctttgcagatacaagtccaattatgtttaaccaacatcataaacatgatacggtaatacacaaaatnnnnnnngaggcagtaataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1578258 |
ccacttcaaacgtgctttgcagatacaagtccaattatgtttaaccaacatcataaacatgatacggtaatacacaaaataaaaaaagaggcagtaataa |
1578357 |
T |
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| Q |
213 |
acaacaaatatgcttcaaacatatggccacaattgcgg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
1578358 |
acaacaaatatgcttcaaacatatggccacaattgcgg |
1578395 |
T |
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