View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_35 (Length: 240)
Name: NF5954_low_35
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 642215 - 642431
Alignment:
| Q |
9 |
ccaagaaagataatgacaaaacttcaacaacccaattttccaataaacaaactcaattcaatctcatcaacaaaaataagatccnnnnnnnctaaaattg |
108 |
Q |
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| T |
642215 |
ccaagaaagataatgacaaaacttcaacaacccaattttccaataaacaaactcaatccaatctcatcaacaaaaataagatccaaaaaaactaaaattg |
642314 |
T |
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| Q |
109 |
atacaaattcaattcaagcaaaacaacatgcaaaatttgaactttaccagnnnnnnncaataaccatgcaatacaatgctgaaaagggtgatgaaaaaga |
208 |
Q |
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| T |
642315 |
acacaaattcaattcaagcaaaacaacatgcaaaatttgaactttaccag-aaaaaacaataaccatgcaatacaatgctgaaaagggtgatgaaaaaga |
642413 |
T |
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| Q |
209 |
gacatataaagaacagaa |
226 |
Q |
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|||||||||||||||||| |
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| T |
642414 |
gacatataaagaacagaa |
642431 |
T |
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