View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_36 (Length: 239)
Name: NF5954_low_36
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 25534392 - 25534225
Alignment:
| Q |
56 |
cctgataaaagtaagacacctctcacatttgcagccaagttttcttctcaaatgaagaaactgcatccttataaacatcagaacagagtaagtttctttg |
155 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534392 |
cctgctaaaagtaagacacctctcacatttgcagcaaagttttcttctcaaatgaagaaactgcatccttataaacatcagaacagagtaagtttctttg |
25534293 |
T |
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| Q |
156 |
attaggaataaaacgcacaaaatcacggtcaatggtttctgtgccatcttcagtaattgccaatgttc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25534292 |
attaggaataaaacgcacaaaatcacggtcaatggtttctgtgccatcttcaataattgccaatgttc |
25534225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 25526390 - 25526223
Alignment:
| Q |
56 |
cctgataaaagtaagacacctctcacatttgcagccaagttttcttctcaaatgaagaaactgcatccttataaacatcagaacagagtaagtttctttg |
155 |
Q |
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|||| |||||||||||||||||||||||||||| | || ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25526390 |
cctgctaaaagtaagacacctctcacatttgcatcaaaagtttcttctcaaataaagaaactgcatccttataaacattagaacagagtaagtttctttg |
25526291 |
T |
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| Q |
156 |
attaggaataaaacgcacaaaatcacggtcaatggtttctgtgccatcttcagtaattgccaatgttc |
223 |
Q |
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| T |
25526290 |
attaggaataaaacgcacaaaatcagggtcaatggtttctgtgtcatcttcagtaattgccaatgttc |
25526223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 25516102 - 25516183
Alignment:
| Q |
137 |
aacagagtaagtttctttgattaggaataaaacgcacaaaatcacggtcaatggtttctgtgccatcttcagtaattgccaa |
218 |
Q |
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|||| ||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| | |||| ||||||||| |||| |
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| T |
25516102 |
aacaaagtaagtttatttgattaggattaaaacgcacaaaatcatggtcaatgttttctgcgtcatcatcagtaatttccaa |
25516183 |
T |
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