View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5954_low_37 (Length: 238)
Name: NF5954_low_37
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 30426695 - 30426484
Alignment:
| Q |
1 |
atatgtgaagaccatatgtgagttttgatggccaaaaaaggttctagaatccaactcaaaattattgattcattcatttcagggtaaatcaattttcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30426695 |
atatgtgaagaccatatgtgagttttgatggccaaaaaaagttctagaatccaactcaaaattattgattcattcatttcagggtaaatcaattttcaat |
30426596 |
T |
|
| Q |
101 |
atataaataaatttgaatttaagagaaaacaaacaaaacagtgttctaagaatgtttgtagtaaaataattggttgcaacagtacacatgcacaattttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30426595 |
atataaataaatttgaatttaagagaaaacaaacaaaacagtgttctaagaatgtttgtagtaaaataattggttgcaacagt--acatgcacaattttt |
30426498 |
T |
|
| Q |
201 |
ccagattcatcgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30426497 |
ccagattcatcgac |
30426484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University