View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_38 (Length: 235)
Name: NF5954_low_38
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 21081195 - 21081411
Alignment:
| Q |
8 |
aagacatagaccatccactagtatctttatgaaagacaaaaggtcattgttggaatgttaaacggaagctccaagttagagcgatcaaaaggtgaatcat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21081195 |
aagacatagaccatccactagtatctttatgaaagacaaaaggtcattgttggaatgttaaacggaagctccaagttagagcgatcaaaaggggaatcat |
21081294 |
T |
|
| Q |
108 |
tgtgttatcgaagaaaattctttagaagggaatcattgtgttgtcgtagctaattctaatgaaaataattatatttgttctatttgtggttttgggggtg |
207 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21081295 |
tgtgttgtcgaagaaaattcttaagaagggaatcattgtgttgtcgtagcaaattctaatgaaaataattatatttgttctatttgtggttttgggggtg |
21081394 |
T |
|
| Q |
208 |
acacaatattatgtgat |
224 |
Q |
| |
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||||||||||||||||| |
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| T |
21081395 |
acacaatattatgtgat |
21081411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 21061802 - 21062018
Alignment:
| Q |
8 |
aagacatagaccatccactagtatctttatgaaagacaaaaggtcattgttggaatgttaaacggaagctccaagttagagcgatcaaaaggtgaatcat |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
21061802 |
aagacatacaccatccactagtatctttatgaaagacaaaaggtcattgttggaatgttaaacggaagctccaagttagagcgatcaaaaggggaaccat |
21061901 |
T |
|
| Q |
108 |
tgtgttatcgaagaaaattctttagaagggaatcattgtgttgtcgtagctaattctaatgaaaataattatatttgttctatttgtggttttgggggtg |
207 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21061902 |
tgtgttgctgaagaaaattcttaagaagggaatcattgtgttgtcgtagcaaattctaatgaaaataattatatttgttctatttgtggttttgggggtg |
21062001 |
T |
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| Q |
208 |
acacaatattatgtgat |
224 |
Q |
| |
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||||||||||||||||| |
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| T |
21062002 |
acacaatattatgtgat |
21062018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 9820479 - 9820374
Alignment:
| Q |
8 |
aagacatagaccatccactagtatctttatgaaagacaaaaggtcattgttggaatgttaaacggaagctccaagttagagcgatcaaaaggtgaatcat |
107 |
Q |
| |
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||||||||||||||||||||||||||| || |||| ||| || |||||||| ||| ||| |||||||| |||| ||| ||||| || | ||||||| |
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| T |
9820479 |
aagacatagaccatccactagtatcttgttggaagatggaagatcgttgttggattgtcaaagggaagctctgagttcgagtgatcataaagggaatcat |
9820380 |
T |
|
| Q |
108 |
tgtgtt |
113 |
Q |
| |
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| |||| |
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|
| T |
9820379 |
tctgtt |
9820374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 9853501 - 9853606
Alignment:
| Q |
8 |
aagacatagaccatccactagtatctttatgaaagacaaaaggtcattgttggaatgttaaacggaagctccaagttagagcgatcaaaaggtgaatcat |
107 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||| || |||||||| ||| ||| |||||||| |||| ||| ||||| || | ||||||| |
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| T |
9853501 |
aagacatagaccatccactagtatcttgttggaagatggaagatcgttgttggattgtcaaagggaagctctgagttcgagtgatcataaagggaatcat |
9853600 |
T |
|
| Q |
108 |
tgtgtt |
113 |
Q |
| |
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| |||| |
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|
| T |
9853601 |
tctgtt |
9853606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 47550347 - 47550404
Alignment:
| Q |
168 |
gaaaataattatatttgttctatttgtggttttgggggtgacacaatattatgtgatg |
225 |
Q |
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||||||||| ||| |||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
47550347 |
gaaaataataatacatgttctgtttgtggttttggaggtgacttaatattatgtgatg |
47550404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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