View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_4 (Length: 669)
Name: NF5954_low_4
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 23 - 649
Target Start/End: Original strand, 45522506 - 45523162
Alignment:
| Q |
23 |
gtagtatatgaaactaatataaccgtatgattattttttagtactagtttagtttgtgagatacaatttagattttcttaaacggaatatttgtttgctt |
122 |
Q |
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| T |
45522506 |
gtagtatatgaaactaatataaccgtatgattattttttagtactagtttagtttgtgagatacaatttagattttcttaaacggaatatttgtttgctt |
45522605 |
T |
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| Q |
123 |
aaataaatatgtctttgaactaataatacgttactgcaacacaagaacaattgtttttattttaagggtgctcccgaaacactctttaagaaatcaaaat |
222 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45522606 |
aattaaatatgtctttgaactaataatatgttactgcaacacaagaacaattgtttttattttaagggtgcttccgaaacactctttaagaaatcaaaat |
45522705 |
T |
|
| Q |
223 |
ttagaaaatattttacaaaaaagttaaatgt---------------attgattatgtagatttttctaaaatcttactattaaaagtgttaaa-agtgct |
306 |
Q |
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| T |
45522706 |
ttaaaaaatatttcacaaaaaagttaaatgttataaatttcaatacattgattatgtagatttttctaaaatcttactattaaaagtgttaaagagtgct |
45522805 |
T |
|
| Q |
307 |
cacttttagtttaattataaatggatgattaaatggaatgatatatacagggatacggaatgactgaggcagggccagtgttaacgatgagtttagcatt |
406 |
Q |
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| T |
45522806 |
tacttttagtttaattataaatgaatgattaaatggaatgatatatacagggatacggaatgactgaggcagggccagtgttaacgatgagtttagcatt |
45522905 |
T |
|
| Q |
407 |
tgctaaagaaccattgaatgtaaaagcaggtgcatgtggaaccgttgtaagaaatgcagagatgaagattgtggatcctgacactggtaaatctttacct |
506 |
Q |
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| T |
45522906 |
tgctaaagaaccattgaatgtaaaagcaggtgcatgtggaaccgttgtaagaaatgcagagatgaagattgtggatcctgacactggtaaatctttacct |
45523005 |
T |
|
| Q |
507 |
cgaaaccaatctggtgaaatctgcataagaggcgaccaaattatgaaaggtgatgtatatatatcatatcattttattaacatgttattattcatccac- |
605 |
Q |
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| T |
45523006 |
cgaaaccaatctggtgaaatctgcataagaggcgaccaaattatgaaaggtgatgtatatatatcatatcattttattaacatgttattattcatccact |
45523105 |
T |
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| Q |
606 |
-------------tattatcacaggatgcactgtacatgaagtacaatttagtagct |
649 |
Q |
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| T |
45523106 |
ttccaaaaagggatattatcacaggatgcacggtacatgaagtacaatttagtagct |
45523162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 353 - 557
Target Start/End: Original strand, 350993 - 351197
Alignment:
| Q |
353 |
acagggatacggaatgactgaggcagggccagtgttaacgatgagtttagcatttgctaaagaaccattgaatgtaaaagcaggtgcatgtggaaccgtt |
452 |
Q |
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|||||| || || |||||||| ||||| ||||| ||||| ||| ||||| ||||||||||||| ||| | |||| ||| |||||||||||||||| ||| |
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| T |
350993 |
acagggttatgggatgactgaagcaggtccagttttaacaatgtgtttatcatttgctaaagagccaatagatgtgaaatcaggtgcatgtggaacagtt |
351092 |
T |
|
| Q |
453 |
gtaagaaatgcagagatgaagattgtggatcctgacactggtaaatctttacctcgaaaccaatctggtgaaatctgcataagaggcgaccaaattatga |
552 |
Q |
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|| |||||||| |||||||||||||| |||||| | | || ||||| ||| |||| ||| |||||||||| || || |||||||||||||| |||| |
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| T |
351093 |
gttagaaatgctgagatgaagattgttgatcctcaaaatgactcctctttgcctagaaatcaacctggtgaaatttgtattagaggcgaccaaatcatga |
351192 |
T |
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| Q |
553 |
aaggt |
557 |
Q |
| |
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||||| |
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| T |
351193 |
aaggt |
351197 |
T |
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