View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_40 (Length: 230)
Name: NF5954_low_40
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 9935390 - 9935172
Alignment:
| Q |
1 |
ttgtccaacaccagtagtaacaatagcatcaccattagttaactcttcaagcatcttaattgcatattgaggcgaaatggcattctcaaatctcttaaaa |
100 |
Q |
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| T |
9935390 |
ttgtccaacaccagtagtaacaatagcatcaccattagttaactcttcaagcatcttaattgcatattgaggcgaaatggcattctcaaatctcttaaaa |
9935291 |
T |
|
| Q |
101 |
gcaagaggaaatttcagcttctgcacattcaactcctgtctccatgcctcaaaatcaagtttccccttgattcctttactctccaaaactctattaagac |
200 |
Q |
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| T |
9935290 |
gcaagaggaaatttcagcttctgcacattcaactcctgtctccatgcctcaaaatcaagtttccccttgattcctttactctccaaaactctattaagac |
9935191 |
T |
|
| Q |
201 |
cttccaacgccaccttcat |
219 |
Q |
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||||||||||||||||||| |
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| T |
9935190 |
cttccaacgccaccttcat |
9935172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 45477335 - 45477118
Alignment:
| Q |
2 |
tgtccaacaccagtagtaacaatagcatcaccattagttaactcttcaagcatcttaattgcatattgaggcgaaatggcattctcaaatctcttaaaag |
101 |
Q |
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||||||||||||||| |||||||||| |||||||| || ||||| ||||||| || ||| ||||| ||||||||||| |||| ||||||| |||||||| |
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| T |
45477335 |
tgtccaacaccagtactaacaatagcgtcaccattcgtcaactcatcaagcacctgaatagcatactgaggcgaaatagcatcctcaaatgtcttaaaac |
45477236 |
T |
|
| Q |
102 |
caagaggaaatttcagcttctgcacattcaactcctgtctccatgcctcaaaatcaagtttccccttgattcctttactctccaaaactctattaagacc |
201 |
Q |
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||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45477235 |
caagaggaaattttaacttctgcacattcaactcctgcctccatgcctcaaaatcaagcttccccttgattcctttactctccaaaactctattaagacc |
45477136 |
T |
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| Q |
202 |
ttccaacgccaccttcat |
219 |
Q |
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|||||||||||||||||| |
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| T |
45477135 |
ttccaacgccaccttcat |
45477118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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