View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_41 (Length: 230)
Name: NF5954_low_41
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 40843241 - 40843443
Alignment:
| Q |
14 |
atgaagaaacatataggatgtccatactcaatcatagcaatggattttttcaacacaaccaagtgtttagcaaatttaacattattttggctcaagggga |
113 |
Q |
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| T |
40843241 |
atgaagaaacatataggatgtccatactcgatcatagcaatggattctttcaacacaacaaagtgtttaggaaatttaacattattttggctcaagggga |
40843340 |
T |
|
| Q |
114 |
agggtgttttaacgaagtcatcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatccaatgaag |
213 |
Q |
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| T |
40843341 |
agggtgttttaacgaagtcatcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatcccatgaag |
40843440 |
T |
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| Q |
214 |
gtg |
216 |
Q |
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||| |
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| T |
40843441 |
gtg |
40843443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 40847595 - 40847756
Alignment:
| Q |
37 |
atactcaatcatagcaatggattttttcaacacaaccaagtgtttagcaaatttaacattattttggctcaaggggaagggtgttttaacgaagtcatcg |
136 |
Q |
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| T |
40847595 |
atactcgatcgtagcaatggattctttcaacaccaccaagtgtttataaaatttatcataattttggctcaag-----gggtgttttaacgaagtcctcg |
40847689 |
T |
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| Q |
137 |
tcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacat |
204 |
Q |
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| T |
40847690 |
tcactcaagtt-aatgataccaacacatgtaccccaaaataatcttcgaagccccacgaatgacacat |
40847756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 37 - 206
Target Start/End: Complemental strand, 46502849 - 46502686
Alignment:
| Q |
37 |
atactcaatcatagcaatggattttttcaacacaaccaagtgtttagcaaatttaacattattttggctcaaggggaagggtgttttaacgaagtcatcg |
136 |
Q |
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|||||| |||||||||||||| | ||||||||| |||| ||||||||||||| || ||| ||| ||| | |||||||||| ||| |||| | || |
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| T |
46502849 |
atactcgatcatagcaatggactctttcaacaccaccatgtgtttagcaaatctaccataattatggtt------gaagggtgttgtaatgaagacctca |
46502756 |
T |
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| Q |
137 |
tcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatcc |
206 |
Q |
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| T |
46502755 |
ttactcaggttaaatgataccaacacctcatccccaaaataatcttcatagccccaccagtggcacatcc |
46502686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 4041419 - 4041513
Alignment:
| Q |
112 |
gaagggtgttttaacgaagtcatcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatcc |
206 |
Q |
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|||||||||| ||| |||| | || ||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||| ||||||| |
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| T |
4041419 |
gaagggtgttgtaatgaagacctcatcactcaagttaaatgataccaacacctcatccccgtcgtaatcttcatatccccaccaatggcacatcc |
4041513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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