View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5954_low_5 (Length: 667)

Name: NF5954_low_5
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5954_low_5
NF5954_low_5
[»] chr4 (23 HSPs)
chr4 (28-660)||(3671635-3672273)
chr4 (441-601)||(55635535-55635696)
chr4 (441-601)||(54861868-54862028)
chr4 (441-597)||(55665264-55665423)
chr4 (266-439)||(55659293-55659466)
chr4 (260-439)||(55635267-55635446)
chr4 (441-592)||(54627314-54627465)
chr4 (501-597)||(52985562-52985658)
chr4 (260-428)||(54862124-54862292)
chr4 (260-428)||(55665516-55665684)
chr4 (441-604)||(55659042-55659208)
chr4 (128-247)||(55659575-55659694)
chr4 (128-246)||(54862390-54862508)
chr4 (459-601)||(50191742-50191884)
chr4 (260-427)||(54627049-54627216)
chr4 (128-205)||(54626843-54626920)
chr4 (147-210)||(51315736-51315799)
chr4 (269-354)||(52985831-52985916)
chr4 (147-195)||(52986667-52986715)
chr4 (54-116)||(55659815-55659877)
chr4 (147-192)||(50192339-50192384)
chr4 (606-655)||(54861725-54861774)
chr4 (128-192)||(55635045-55635109)
[»] chr8 (5 HSPs)
chr8 (252-439)||(9889544-9889731)
chr8 (437-604)||(9889810-9889977)
chr8 (120-246)||(9889319-9889445)
chr8 (29-121)||(9889137-9889229)
chr8 (604-660)||(9890056-9890112)
[»] chr2 (4 HSPs)
chr2 (441-601)||(13401715-13401875)
chr2 (260-426)||(13401445-13401611)
chr2 (606-655)||(13401970-13402019)
chr2 (158-198)||(13401257-13401297)
[»] chr1 (3 HSPs)
chr1 (482-558)||(37310524-37310600)
chr1 (503-558)||(22514483-22514538)
chr1 (157-201)||(37311443-37311487)
[»] chr7 (1 HSPs)
chr7 (482-557)||(46154649-46154724)


Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 28 - 660
Target Start/End: Complemental strand, 3672273 - 3671635
Alignment:
Q  28 ggcacccagttttacgattgatgaacttattcaatctgatgccgttcctcgtcttgttgaatttctagttattgacgattttcctcaacgccagtttttt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3672273 ggcacccagttttacgattgatgaacttattcaatctgatgccgttcctcgtcttgttgaatttctagttattgacgattttcctcaacgccagtttttt 3672174  T
Q  128 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattactagtcaacctactcagtt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3672173 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattactagtcaacctactcagtt 3672074  T
Q  228 -----cacctagtgttgctgttcgacatgaggcttcatgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggt 322  Q
         ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3672073 acgttcacctagtgttgctgttcgacatgaagcttcatgggcgttgggaaacgttgcctgtgattcccctagttgccgtgatcttgttctcagtcatggt 3671974  T
Q  323 gccatgatcccgctgttatcccacttgaatgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccac 422  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  3671973 gccatgatcccgctgttatcccacttgaatgagcttacagatatttctatgctgagagttgcaacgcgaaccctgtcaaacttttgcatgggcaaaccac 3671874  T
Q  423 aacccctgtttgagcagttgaggccagcacttcccactctcgagcgtttgatt-ttttccaatgatcaagaagtcctggcagatgcatgctgggcactct 521  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3671873 aacccctgtttgagcagttgacgccagcacttcccactctcgagcgtttgatttttttccaatgatcaagaagtcatggcagatgcatgctgggcactct 3671774  T
Q  522 catatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttgaacccatctccttcagt 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  3671773 catatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtttgtggcagactggtggagctcctttcgaacccatctccttcagt 3671674  T
Q  622 ggtgattcctgcacttcgcacattgggaaatattcttgg 660  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  3671673 ggtgattcctgcactccgcacattgggaaatattgttgg 3671635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 441 - 601
Target Start/End: Original strand, 55635535 - 55635696
Alignment:
Q  441 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcat-atctttctgatggaa 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  55635535 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatgaagaagtcctgtcagatgcatgctgggcactctcataatatttctgatggaa 55635634  T
Q  540 caaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 601  Q
      ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  55635635 tgaatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctcctt 55635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 441 - 601
Target Start/End: Complemental strand, 54862028 - 54861868
Alignment:
Q  441 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 540  Q
    |||||||||| |||||| ||||| ||| |||| |||||||||| ||  ||||||||||  | |||||||| ||||||||||| |||||||||||||||||    
T  54862028 tgaggccagcgcttcccgctctcaagcatttggttttttccaaagacgaagaagtcctaaccgatgcatggtgggcactctcgtatctttctgatggaac 54861929  T
Q  541 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 601  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54861928 aaatgacaatatccaagcggtgatcgaggcaggtgtatgtggcagactggtgcagctcctt 54861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 441 - 597
Target Start/End: Complemental strand, 55665423 - 55665264
Alignment:
Q  441 tgaggccagcacttcccactctcgagcgtttgattttttccaatga---tcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatgg 537  Q
    |||||||||| || ||| |||| |||||||||||||| ||||||||   | |||||||||||   |||||||| |||||| |||||||||||||||||||    
T  55665423 tgaggccagcgctgccctctcttgagcgtttgattttgtccaatgacgatgaagaagtcctgagtgatgcatgttgggcattctcatatctttctgatgg 55665324  T
Q  538 aacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagct 597  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55665323 aacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagct 55665264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 266 - 439
Target Start/End: Complemental strand, 55659466 - 55659293
Alignment:
Q  266 ttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagata 365  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||  ||| |      
T  55659466 ttgggaaatgttgccggtgattcccctagttgtcgtgatcttgttctcagtcatggtgcgttgatcccgctgttatcccagttgaatgagcaagcaaagc 55659367  T
Q  366 tttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccctgtttgagcag 439  Q
    ||||||||||||||||||| |||    ||||||||||||||||||| || ||||||| |||||  |||||||||    
T  55659366 tttctatgctgagaattgctacgttggccctgtcaaacttttgcagaggaaaaccaccacccccatttgagcag 55659293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 260 - 439
Target Start/End: Original strand, 55635267 - 55635446
Alignment:
Q  260 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 359  Q
    ||||| ||||||||||||||| |||| |||||| | || ||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||  |    
T  55635267 tgggcattgggaaacgttgccggtgagtccccttggtgccgtgatcttgttctcagtcatggtgccctgattccactgttatcccagttgaatgagcaag 55635366  T
Q  360 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccctgtttgagcag 439  Q
    ||    ||||||||||||||||||| ||  | ||| ||||||||||||||||||| || ||||||||||| |||||||||    
T  55635367 caaggctttctatgctgagaattgccacatggaccttgtcaaacttttgcaggggaaagccacaacccctatttgagcag 55635446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 441 - 592
Target Start/End: Original strand, 54627314 - 54627465
Alignment:
Q  441 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 540  Q
    ||||| |||| |||||| ||||| || ||||| |||||||||| ||| |||  |||||| | || ||||| ||||||||||| |||||||||||||||||    
T  54627314 tgaggtcagcgcttcccgctctcaagtgtttggttttttccaaagatgaagtcgtcctgaccgaggcatgttgggcactctcgtatctttctgatggaac 54627413  T
Q  541 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtg 592  Q
    || ||| || |||||||||||||||||||||||||||||||| |||||||||    
T  54627414 aagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtg 54627465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 501 - 597
Target Start/End: Complemental strand, 52985658 - 52985562
Alignment:
Q  501 cagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagct 597  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  52985658 cagatgcatgttgggcaatctcatatctttctgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgtggcagactggtggagct 52985562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 260 - 428
Target Start/End: Complemental strand, 54862292 - 54862124
Alignment:
Q  260 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 359  Q
    ||||| ||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |       
T  54862292 tgggcattgggaaacattgctggtgattcccctaggtgtcgtgatcttgttctcagtcatggtgccctgatcccgctgttatcccagttgaatgaccaaa 54862193  T
Q  360 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccc 428  Q
    ||||  ||| |||  |||||| ||| |   | ||| |||||||||||||||||||||| ||||||||||    
T  54862192 cagagctttatatattgagaaatgccatttggaccttgtcaaacttttgcaggggcaagccacaacccc 54862124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 260 - 428
Target Start/End: Complemental strand, 55665684 - 55665516
Alignment:
Q  260 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 359  Q
    ||||| ||||||||| ||||| ||||||||||||| || |||||||||||| |||||||||||||  |||||||||||||| |||| ||||||||||  |    
T  55665684 tgggcattgggaaacattgccggtgattcccctaggtgccgtgatcttgttttcagtcatggtgcgctgatcccgctgttaacccagttgaatgagcaag 55665585  T
Q  360 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccc 428  Q
    || |  |||||||||||||| |||| ||| | |||||||||| ||||||||  ||||| |||| |||||    
T  55665584 caaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccacccc 55665516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 441 - 604
Target Start/End: Complemental strand, 55659208 - 55659042
Alignment:
Q  441 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttct---gatgg 537  Q
    |||||| ||||||||| || |||  |||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||||||||    ||||    
T  55659208 tgaggcaagcacttcctaccctcaggcgtttgattttttccaatgatgaagaagtcgtgacagaagcatgctgggcactctcatatctttctaaatatgg 55659109  T
Q  538 aacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 604  Q
      |||||||| ||||||||||||| |||||||| ||  ||||||  ||||| || ||||||||||||    
T  55659108 ttcaaatgacgaaatccaagcggtaatcgaggctggcatatgtgatagactagtagagctccttttg 55659042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 55659694 - 55659575
Alignment:
Q  128 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattactagtcaacctactcagtt 227  Q
    ||||||||||||||| |  || |||||||||||||||||| |||||||||||| || |||||||| |||||||||||| |||| ||||| ||||| ||||    
T  55659694 gctgcttggatactcacgaacgtagcaggtggaacttctgtgaacactaaggtggtcattgatcacggggctgtaccaatacttgtcaagctacttagtt 55659595  T
Q  228 cacctagtgttgctgttcga 247  Q
    ||||||| | || |||||||    
T  55659594 cacctagcgatgatgttcga 55659575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 54862508 - 54862390
Alignment:
Q  128 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattactagtcaacctactcagtt 227  Q
    |||||||||  |||| || ||||||||  ||||||||| |||||||||||||| ||||||||||||||||| |||||| || |  |||| ||||| ||||    
T  54862508 gctgcttgggcactcacaaacatagcatctggaacttcggagaacactaaggtggtaattgatcatggggcagtaccaatatttatcaagctacttagtt 54862409  T
Q  228 cacctagtgttgctgttcg 246  Q
    |||| |||| |||||||||    
T  54862408 caccaagtgatgctgttcg 54862390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 459 - 601
Target Start/End: Complemental strand, 50191884 - 50191742
Alignment:
Q  459 ctctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 558  Q
    |||| |||||||||||||| ||  | ||| ||||||| ||| ||||||| ||||||||  | ||||| || |||||||| |||||||||||||||||||     
T  50191884 ctcttgagcgtttgattttgtcggaggatgaagaagttctgacagatgcctgctgggctttatcatacctatctgatggcacaaatgacaaaatccaaga 50191785  T
Q  559 ggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 601  Q
      | || || ||||||||||||||| || ||||| ||||||||    
T  50191784 aattattgacgcaggtgtatgtggccgattggtgcagctcctt 50191742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 260 - 427
Target Start/End: Original strand, 54627049 - 54627216
Alignment:
Q  260 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 359  Q
    ||||| ||||||||| ||||  |||||||||||||  | |||||||||||||||||||| |||||| ||||||  || ||||||||  |||||||||  |    
T  54627049 tgggcattgggaaacattgctggtgattcccctagaggccgtgatcttgttctcagtcacggtgccctgatcctacttttatcccagctgaatgagcaag 54627148  T
Q  360 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaaccc 427  Q
     ||   ||| || |||||||| |||     | || ||||||||||||||||||||||| |||||||||    
T  54627149 aagggctttataggctgagaaatgccgtttggacgctgtcaaacttttgcaggggcaagccacaaccc 54627216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 54626843 - 54626920
Alignment:
Q  128 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtacca 205  Q
    |||||||||  |||| || ||||||||| |||||||||||||||||||||||| ||| |||||||||| || ||||||    
T  54626843 gctgcttgggcactcacaaacatagcagctggaacttctgagaacactaaggtggtagttgatcatggcgcagtacca 54626920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 51315736 - 51315799
Alignment:
Q  147 acatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattact 210  Q
    ||||||||| |||||||||||||||||||||| |  ||||||||||||| ||||||||| ||||    
T  51315736 acatagcagctggaacttctgagaacactaagttgctaattgatcatggagctgtaccaatact 51315799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 52985916 - 52985831
Alignment:
Q  269 ggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatga 354  Q
    ||||||||||||  |||||||||||  || |||||||||||| |||||||||||||| |||||||  || ||||||| || |||||    
T  52985916 ggaaacgttgccgttgattcccctatgtgccgtgatcttgttttcagtcatggtgccttgatcccattgctatcccagttcaatga 52985831  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 52986715 - 52986667
Alignment:
Q  147 acatagcaggtggaacttctgagaacactaaggttgtaattgatcatgg 195  Q
    |||||| || |||||||||| ||||||||||||| ||||||||||||||    
T  52986715 acatagtagctggaacttctaagaacactaaggtggtaattgatcatgg 52986667  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 55659877 - 55659815
Alignment:
Q  54 ttattcaatctgatgccgttcctcgtcttgttgaatttctagttattgacgattttcctcaac 116  Q
    ||||||||||||  |  ||||||||| |||||||||||||| |||  ||||||||||||||||    
T  55659877 ttattcaatctggcgttgttcctcgttttgttgaatttctatttagggacgattttcctcaac 55659815  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 50192384 - 50192339
Alignment:
Q  147 acatagcaggtggaacttctgagaacactaaggttgtaattgatca 192  Q
    ||||||||  |||||||||||||||||||||||| || ||||||||    
T  50192384 acatagcatctggaacttctgagaacactaaggtggtgattgatca 50192339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 655
Target Start/End: Complemental strand, 54861774 - 54861725
Alignment:
Q  606 acccatctccttcagtggtgattcctgcacttcgcacattgggaaatatt 655  Q
    ||||||||||||||||| |||||||||   |||||||| |||||||||||    
T  54861774 acccatctccttcagtgctgattcctgtcgttcgcacaatgggaaatatt 54861725  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 55635045 - 55635109
Alignment:
Q  128 gctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatca 192  Q
    |||||||||  |||| || ||||||||   |||||||||||||||| |||||| |||||||||||    
T  55635045 gctgcttgggcactcacaaacatagcatccggaacttctgagaacattaaggtggtaattgatca 55635109  T

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Target: chr8 (Bit Score: 164; Significance: 3e-87; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 252 - 439
Target Start/End: Original strand, 9889544 - 9889731
Alignment:
Q  252 aggcttcatgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaa 351  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889544 aggcttcgtgggcgttgggaaacgttgcctgtgattcccctagttgccgttatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaa 9889643  T
Q  352 tgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacccctgtttgagcag 439  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  9889644 tgagctagcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgtaggggcaaaccgcaacccctgtttgagcag 9889731  T

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Target: chr8; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 437 - 604
Target Start/End: Original strand, 9889810 - 9889977
Alignment:
Q  437 cagttgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatg 536  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889810 cagttgaggccagcacttcccactctcgagcttttgattttttccaatgatgaagaagtcctggcagatgcatgctgggcactctcatatctttctgatg 9889909  T
Q  537 gaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889910 gaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 9889977  T

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Target: chr8; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 9889319 - 9889445
Alignment:
Q  120 agttttttgctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattactagtcaacct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889319 agttttttgctgcttggatactcgcatacatagcaggtggaacttctgagaacactaaggttgtaattgatcatggggctgtaccattactagtcaacct 9889418  T
Q  220 actcagttcacctagtgttgctgttcg 246  Q
    |||||||||||||||||||||||||||    
T  9889419 actcagttcacctagtgttgctgttcg 9889445  T

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Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 9889137 - 9889229
Alignment:
Q  29 gcacccagttttacgattgatgaacttattcaatctgatgccgttcctcgtcttgttgaatttctagttattgacgattttcctcaacgccag 121  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889137 gcacccagttttacgattgatgaacttattcaatctgatgctgttcctcgtcttgttgaatttctagttattgacgattttcctcaacgccag 9889229  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 604 - 660
Target Start/End: Original strand, 9890056 - 9890112
Alignment:
Q  604 gaacccatctccttcagtggtgattcctgcacttcgcacattgggaaatattcttgg 660  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9890056 gaacccttctccttcagtggtgattcctgcacttcgcacattgggaaatattgttgg 9890112  T

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Target: chr2 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 441 - 601
Target Start/End: Original strand, 13401715 - 13401875
Alignment:
Q  441 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 540  Q
    ||||||||||||||||  |||| ||||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  13401715 tgaggccagcacttccggctcttgagcgtttggttttttcaaatgatgaagaagtcctgacagatgcatgctgggcactctcttatctttctgatggaac 13401814  T
Q  541 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 601  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  13401815 aaatgacaaaatccaagcggtgattgaggcaggtgtatgtggcagactagtgcagctcctt 13401875  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 260 - 426
Target Start/End: Original strand, 13401445 - 13401611
Alignment:
Q  260 tgggcgttgggaaacgttgcctgtgattcccctagttgtcgtgatcttgttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttg 359  Q
    ||||| |||||||| |||||  ||||||| ||||| || || ||||||||||| || ||||||||| |||||||||||||| |||| ||||||||||  |    
T  13401445 tgggcattgggaaatgttgctggtgattcacctaggtgccgcgatcttgttcttagccatggtgccctgatcccgctgttaacccagttgaatgagcagg 13401544  T
Q  360 cagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcaggggcaaaccacaacc 426  Q
    || |  |||| |||||||||| ||| ||  | || ||||||||||||||||||||||| ||||||||    
T  13401545 caaagctttcaatgctgagaaatgccacatggactctgtcaaacttttgcaggggcaagccacaacc 13401611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 655
Target Start/End: Original strand, 13401970 - 13402019
Alignment:
Q  606 acccatctccttcagtggtgattcctgcacttcgcacattgggaaatatt 655  Q
    ||||||||||||||||| |||| ||||||||||||||  |||||||||||    
T  13401970 acccatctccttcagtgctgatccctgcacttcgcacggtgggaaatatt 13402019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 13401257 - 13401297
Alignment:
Q  158 ggaacttctgagaacactaaggttgtaattgatcatggggc 198  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  13401257 ggaacttctgagaatactaaggtggtaattgatcatggggc 13401297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 558
Target Start/End: Complemental strand, 37310600 - 37310524
Alignment:
Q  482 aatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 558  Q
    |||||| |||||||| || | ||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||||    
T  37310600 aatgatgaagaagtcttgactgatgcctgctgggcactatcatatctttctgatggtacaaacgataaaattcaagc 37310524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 558
Target Start/End: Complemental strand, 22514538 - 22514483
Alignment:
Q  503 gatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 558  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  22514538 gatgcctgctgggcactatcatatctttctgatggtacaaatgaaaaaattcaagc 22514483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 37311487 - 37311443
Alignment:
Q  157 tggaacttctgagaacactaaggttgtaattgatcatggggctgt 201  Q
    |||||| ||||| ||||||||||| |||||||| |||||||||||    
T  37311487 tggaacatctgaaaacactaaggtggtaattgaccatggggctgt 37311443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 557
Target Start/End: Complemental strand, 46154724 - 46154649
Alignment:
Q  482 aatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaag 557  Q
    |||||| |||||||| || | ||||| || |||||||| |||||||||||||||||  ||||||||||||| ||||    
T  46154724 aatgatgaagaagtcttgactgatgcctgttgggcactttcatatctttctgatggtgcaaatgacaaaattcaag 46154649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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