View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5954_low_6 (Length: 649)
Name: NF5954_low_6
Description: NF5954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5954_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 644
Target Start/End: Complemental strand, 42213310 - 42212653
Alignment:
| Q |
17 |
ctatcatcctaaataaggatcagcaacacactgttatattggtttaaccaaagaatcataagcataactaccaatttgatacaataaattaaagaaaa-- |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213310 |
ctatcatcctaaataaggatcagcaacacactgttatattggtttaaccaaagaatcataagcataactaccaatttgatacaataaattaaagaaaaac |
42213211 |
T |
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| Q |
115 |
---------tctctcaagacaagacatttactagctaccatcttggaggagcagaacaataattaatgaaaaataagaaacatattaatattatcactca |
205 |
Q |
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| T |
42213210 |
aaatgaaaatctctcaagacaagacatttactagctaccatcttggaggagcagaacaataattaatgaaaaataagaaacatattaatattatcactca |
42213111 |
T |
|
| Q |
206 |
tataagtataaataaactttaacaaagaacaaaatatactattggacccaaaatgttaacaagggaaaataaaactcagctaagtccatgatgaccgatg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213110 |
tataagtataaataaactttaacaaagaacaaaatatactattggacccaaaatgttaacaagggaaaataaaactcagctaagtccatgatgaccgatg |
42213011 |
T |
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| Q |
306 |
aggaagtcaaattgtagaacaggatgatatcttcataattgaacaataataatt--nnnnnnnntgtggaacaaactgtaaagtataggataagttggat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42213010 |
aggaagtcaaattgtagaacaggatgatatcttcataattgaacaataataattaaaaaaaaaatgtggaacaaactgtaaagtataggataagttggat |
42212911 |
T |
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| Q |
404 |
taagatagcacagctaggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttcatcaaacaagcaaattacacgtgaattgcagtgtg |
503 |
Q |
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| T |
42212910 |
taagatagcacagctaggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttcatcaaacaagcaaattacacatgaattgcagtgtg |
42212811 |
T |
|
| Q |
504 |
aaatggataacaattaacatcatgttacaaattcacctatggtttttactatctatttattcacacatatttattga-----------------ttatat |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42212810 |
aaatggataacaattaacatcatgttacaaattcacctatggtttttactatctatttattcacacatatttattgattatgtcatatcctatcttatat |
42212711 |
T |
|
| Q |
587 |
gtgatgctttttgtacttaaaactaggtaccgataaatagaattcgtcctatgcttct |
644 |
Q |
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| T |
42212710 |
gtgatgctttttgtacttaaaactaggtaccaataaatagaattcgtcgtatgattct |
42212653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 371 - 575
Target Start/End: Complemental strand, 42205753 - 42205553
Alignment:
| Q |
371 |
ggaacaaactgtaaagtataggataagttggattaagatagcacagct--aggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttc |
468 |
Q |
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||||| |||||| |||||||||||| |||||||||||||| || | | | |||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
42205753 |
ggaactaactgtgaagtataggataggttggattaagatatcatatcacaactagaaaaaataatcaatc-aaaagtgcaaataaatctgtgaaatgttc |
42205655 |
T |
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| Q |
469 |
atcaaacaagcaaattacacgtgaattgcagtgtgaaatggataacaattaacatcatgttacaaattcaccta---tggtttttactatctatttattc |
565 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||| || |||| ||||||||||||||||| | ||||| ||||||||||||| |
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| T |
42205654 |
atcaaacaagcaaattacacatgaatt-cagtgtgaaatgga-------tatcatcgtgttacaaattcacctaattaaggttttattatctatttattc |
42205563 |
T |
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| Q |
566 |
acacatattt |
575 |
Q |
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|||||||||| |
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| T |
42205562 |
acacatattt |
42205553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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