View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5955_high_3 (Length: 399)

Name: NF5955_high_3
Description: NF5955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5955_high_3
NF5955_high_3
[»] chr2 (16 HSPs)
chr2 (60-256)||(38082676-38082883)
chr2 (257-299)||(26021917-26021959)
chr2 (256-300)||(5504343-5504387)
chr2 (257-297)||(5505228-5505268)
chr2 (18-49)||(43035537-43035568)
chr2 (18-48)||(4694995-4695025)
chr2 (18-56)||(5887665-5887703)
chr2 (257-299)||(6182092-6182134)
chr2 (18-56)||(9160927-9160965)
chr2 (18-56)||(13267968-13268006)
chr2 (18-56)||(39070116-39070154)
chr2 (256-298)||(42946476-42946518)
chr2 (18-63)||(4014799-4014844)
chr2 (19-56)||(7607259-7607296)
chr2 (251-299)||(9371848-9371896)
chr2 (17-49)||(12236217-12236249)
[»] chr5 (18 HSPs)
chr5 (257-397)||(30002864-30003004)
chr5 (18-49)||(16371472-16371503)
chr5 (18-56)||(6029709-6029747)
chr5 (18-56)||(9902493-9902531)
chr5 (18-56)||(12707869-12707907)
chr5 (18-56)||(12769118-12769156)
chr5 (18-56)||(20695476-20695514)
chr5 (18-56)||(24443860-24443898)
chr5 (18-56)||(38683025-38683063)
chr5 (18-56)||(41958022-41958060)
chr5 (253-294)||(1282250-1282291)
chr5 (257-298)||(42310849-42310890)
chr5 (18-46)||(12819549-12819577)
chr5 (17-49)||(14808931-14808963)
chr5 (17-49)||(17869124-17869156)
chr5 (17-49)||(23310494-23310526)
chr5 (18-62)||(27389914-27389958)
chr5 (18-50)||(40044915-40044947)
[»] chr1 (18 HSPs)
chr1 (257-397)||(37689229-37689370)
chr1 (257-297)||(15374705-15374745)
chr1 (257-299)||(3788435-3788477)
chr1 (257-297)||(15373957-15373997)
chr1 (18-60)||(25820938-25820981)
chr1 (18-49)||(35758372-35758403)
chr1 (18-56)||(8291745-8291783)
chr1 (18-48)||(15906168-15906198)
chr1 (18-56)||(18216568-18216606)
chr1 (18-60)||(39606502-39606544)
chr1 (18-56)||(52492674-52492712)
chr1 (18-55)||(12282711-12282748)
chr1 (18-58)||(20164064-20164104)
chr1 (257-297)||(38619017-38619057)
chr1 (17-49)||(42695673-42695705)
chr1 (265-297)||(46357885-46357917)
chr1 (257-297)||(46358617-46358657)
chr1 (17-49)||(48314263-48314295)
[»] chr7 (11 HSPs)
chr7 (257-297)||(9378729-9378769)
chr7 (256-294)||(9379806-9379844)
chr7 (18-49)||(29151680-29151711)
chr7 (18-48)||(6369624-6369654)
chr7 (18-48)||(6378089-6378119)
chr7 (18-56)||(8856372-8856410)
chr7 (18-56)||(35376853-35376891)
chr7 (18-56)||(38678156-38678194)
chr7 (18-56)||(40013361-40013399)
chr7 (18-48)||(47086301-47086331)
chr7 (17-49)||(7312453-7312485)
[»] chr3 (16 HSPs)
chr3 (256-297)||(51491708-51491749)
chr3 (257-297)||(42147556-42147596)
chr3 (18-56)||(12948906-12948944)
chr3 (257-299)||(50306529-50306571)
chr3 (256-299)||(10343329-10343372)
chr3 (18-49)||(32946353-32946384)
chr3 (18-56)||(8508029-8508067)
chr3 (18-56)||(9610030-9610068)
chr3 (18-56)||(13777569-13777607)
chr3 (18-56)||(30703188-30703226)
chr3 (257-299)||(32355864-32355906)
chr3 (18-48)||(32597346-32597376)
chr3 (18-56)||(43968020-43968058)
chr3 (18-56)||(47410745-47410783)
chr3 (18-62)||(1242314-1242358)
chr3 (17-49)||(14868855-14868887)
[»] scaffold0016 (1 HSPs)
scaffold0016 (257-297)||(67247-67287)
[»] chr8 (13 HSPs)
chr8 (257-299)||(1488492-1488534)
chr8 (18-60)||(34744255-34744297)
chr8 (18-56)||(36442403-36442441)
chr8 (256-297)||(10501920-10501961)
chr8 (17-49)||(26738067-26738099)
chr8 (258-297)||(10500953-10500992)
chr8 (18-49)||(18040233-18040264)
chr8 (18-56)||(25199143-25199181)
chr8 (17-50)||(26732873-26732906)
chr8 (17-49)||(10926086-10926118)
chr8 (259-299)||(31694164-31694204)
chr8 (257-297)||(38544334-38544374)
chr8 (18-50)||(43129193-43129225)
[»] chr6 (9 HSPs)
chr6 (18-56)||(5626053-5626091)
chr6 (18-49)||(32643724-32643755)
chr6 (18-56)||(2675292-2675330)
chr6 (18-56)||(2959090-2959128)
chr6 (17-50)||(659250-659283)
chr6 (18-62)||(8939723-8939767)
chr6 (18-50)||(9062975-9063007)
chr6 (17-49)||(21513170-21513202)
chr6 (18-50)||(23383055-23383087)
[»] chr4 (12 HSPs)
chr4 (17-49)||(33859500-33859532)
chr4 (17-49)||(51564387-51564419)
chr4 (18-49)||(42154137-42154168)
chr4 (257-299)||(5825334-5825376)
chr4 (18-56)||(23974635-23974673)
chr4 (18-56)||(24712185-24712223)
chr4 (18-56)||(50779784-50779822)
chr4 (18-56)||(55853320-55853358)
chr4 (257-298)||(45534028-45534069)
chr4 (18-62)||(12821260-12821304)
chr4 (17-49)||(35828372-35828404)
chr4 (18-50)||(36608097-36608129)
[»] scaffold0013 (1 HSPs)
scaffold0013 (18-56)||(90666-90704)
[»] scaffold0457 (1 HSPs)
scaffold0457 (17-49)||(6875-6907)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 38082883 - 38082676
Alignment:
Q  60 atattctctaaccgagtactagtagtatatgaaaaatcatgacatctcaatcaatgacgagatagtaaataattgagataactttgcattttaaggttta 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38082883 atattctctaaccgagtactagtagtatatgaaaaatcatgacatctcaatcaatgacgagatagtaaataattgagataactttgtattttaaggttta 38082784  T
Q  160 tttctaatcttgtgagtctctaaaatggaacttactaaaaaatattagaacttact-----------aaaaaatattacttcgaagaaacatcttaatag 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||           |||||||||||||||||||||||||||||||||    
T  38082783 tttctaatcttgtgagtctctaaaatggaacttactaaaaaatattggaccttactaacccaagtgaaaaaaatattacttcgaagaaacatcttaatag 38082684  T
Q  249 acaattgt 256  Q
    | ||||||    
T  38082683 agaattgt 38082676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 26021959 - 26021917
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccatag 299  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccatag 26021917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 5504343 - 5504387
Alignment:
Q  256 tggtggcatttagggtgggaaggggaaagatttttccaccataga 300  Q
    |||||||||||||||||||||||||||||| ||| |||| |||||    
T  5504343 tggtggcatttagggtgggaaggggaaagagtttcccactataga 5504387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 5505268 - 5505228
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  5505268 ggtggcatttagggtgggaagaggaaagagttttccaccat 5505228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 43035537 - 43035568
Alignment:
Q  18 tttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||||||||||||||||||||    
T  43035537 tttataatggctttaccatttcgtctatctac 43035568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 4695025 - 4694995
Alignment:
Q  18 tttataatggctttaccatttcgtctatcta 48  Q
    |||||||||||||||||||||||||||||||    
T  4695025 tttataatggctttaccatttcgtctatcta 4694995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 5887665 - 5887703
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  5887665 tttataatggctttatcatttcgtctatctacaaaaaaa 5887703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 6182092 - 6182134
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccatag 299  Q
    |||| ||||||||||||| | ||||||||||||||||||||||    
T  6182092 ggtgacatttagggtgggtaagggaaagatttttccaccatag 6182134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 9160927 - 9160965
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  9160927 tttataatggctttgccatttcgtctatctacaaaaaaa 9160965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 13268006 - 13267968
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  13268006 tttataatggctttgccatttcgtctatctacaaaaaaa 13267968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 39070116 - 39070154
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  39070116 tttataatggctttgccatttcgtctatctacaaaaaaa 39070154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 298
Target Start/End: Complemental strand, 42946518 - 42946476
Alignment:
Q  256 tggtggcatttagggtgggaaggggaaagatttttccaccata 298  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||    
T  42946518 tggtggcatttagggtgggaatgggaaagagtttcccaccata 42946476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 4014844 - 4014799
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaagaaatat 63  Q
    |||||||||||||| |||||||||||||||||  ||||| ||||||    
T  4014844 tttataatggctttgccatttcgtctatctaccaaaaaaaaaatat 4014799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 7607296 - 7607259
Alignment:
Q  19 ttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  7607296 ttataatggctttgccatttcgtctatctacaaaaaaa 7607259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 9371896 - 9371848
Alignment:
Q  251 aattgtggtggcatttagggtgggaaggggaaagatttttccaccatag 299  Q
    ||||| ||||| ||||| |||||||| |||||||||||| |||||||||    
T  9371896 aattgaggtggtatttaaggtgggaacgggaaagattttcccaccatag 9371848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 12236217 - 12236249
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||| |||||||||||||||||    
T  12236217 atttataatggctttgccatttcgtctatctac 12236249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 257 - 397
Target Start/End: Original strand, 30002864 - 30003004
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccatagatcagttgacattttaccattaaattgaaaaggaatactgattttattatggactgt 356  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  30002864 ggtggcatttagggtgggaaggggaaagattttcccaccataggtcagttgacattttaccgttaaattaaaaaggaatactgattttattatggactgt 30002963  T
Q  357 ctacaccctatcttttcccacccacctttctctctgctcct 397  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  30002964 ctacaccctatcttttcccacccacctttctctctcctcct 30003004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 16371503 - 16371472
Alignment:
Q  18 tttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||||||||||||||||||||    
T  16371503 tttataatggctttaccatttcgtctatctac 16371472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 6029709 - 6029747
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  6029709 tttataatggctttgccatttcgtctatctacaaaaaaa 6029747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 9902531 - 9902493
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  9902531 tttataatggctttgccatttcgtctatctacaaaaaaa 9902493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 12707907 - 12707869
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  12707907 tttataatggttttaccatttcgtctatctacataaaaa 12707869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 12769156 - 12769118
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  12769156 tttataatggttttaccatttcgtctatctacataaaaa 12769118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 20695514 - 20695476
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  20695514 tttataatggctttgccatttcgtctatctacaaaaaaa 20695476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 24443898 - 24443860
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  24443898 tttataatggctttgccatttcgtctatctacaaaaaaa 24443860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 38683025 - 38683063
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  38683025 tttataatggctttgccatttcgtctatctacaaaaaaa 38683063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 41958060 - 41958022
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  41958060 tttataatggctttgccatttcgtctatctacaaaaaaa 41958022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 1282250 - 1282291
Alignment:
Q  253 ttgtggtggcatttagggtgggaaggggaaagatttttccac 294  Q
    |||||||||||||||||||||||| |||||||| ||| ||||    
T  1282250 ttgtggtggcatttagggtgggaatgggaaagagtttcccac 1282291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 42310849 - 42310890
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccata 298  Q
    |||||||||||||||||||| |||||||| ||| ||||||||    
T  42310849 ggtggcatttagggtgggaatgggaaagagtttcccaccata 42310890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 12819577 - 12819549
Alignment:
Q  18 tttataatggctttaccatttcgtctatc 46  Q
    |||||||||||||||||||||||||||||    
T  12819577 tttataatggctttaccatttcgtctatc 12819549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 14808931 - 14808963
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||| |||||||||||||||||    
T  14808931 atttataatggctttgccatttcgtctatctac 14808963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 17869156 - 17869124
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||| |||||||||||||||||    
T  17869156 atttataatggctttgccatttcgtctatctac 17869124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 23310494 - 23310526
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||| |||||||||||||||||    
T  23310494 atttataatggctttgccatttcgtctatctac 23310526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 27389958 - 27389914
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaagaaata 62  Q
    |||||||||||||| |||||||||||||||||  ||||| |||||    
T  27389958 tttataatggctttgccatttcgtctatctaccaaaaaaaaaata 27389914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 40044947 - 40044915
Alignment:
Q  18 tttataatggctttaccatttcgtctatctaca 50  Q
    |||||||||||||| ||||||||||||||||||    
T  40044947 tttataatggctttgccatttcgtctatctaca 40044915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 257 - 397
Target Start/End: Original strand, 37689229 - 37689370
Alignment:
Q  257 ggtggcatttagggtgggaag-gggaaagatttttccaccatagatcagttgacattttaccattaaattgaaaaggaatactgattttattatggactg 355  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  37689229 ggtggcatttaggatgggaagagggaaagatttttccaccataggtcagctgacattttaccattaaattgaaaaggaatattgatttcattatggactg 37689328  T
Q  356 tctacaccctatcttttcccacccacctttctctctgctcct 397  Q
    ||||| ||||||||||||||||||||| |||||||| |||||    
T  37689329 tctacgccctatcttttcccacccacccttctctctcctcct 37689370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 15374745 - 15374705
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  15374745 ggtggcatttagggtgggaaggggaaagattttcccaccat 15374705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 3788435 - 3788477
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccatag 299  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccatag 3788477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 15373957 - 15373997
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  15373957 ggtggcatttagggtgggatggggaaagattttcccaccat 15373997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 25820981 - 25820938
Alignment:
Q  18 tttataatggctttaccatttcgtctatcta-cagaaaaagaaa 60  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  25820981 tttataatggctttgccatttcgtctatctaccagaaaaagaaa 25820938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 35758372 - 35758403
Alignment:
Q  18 tttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||||||||||||||||||||    
T  35758372 tttataatggctttaccatttcgtctatctac 35758403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 8291783 - 8291745
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  8291783 tttataatggctttgccatttcgtctatctacaaaaaaa 8291745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 15906198 - 15906168
Alignment:
Q  18 tttataatggctttaccatttcgtctatcta 48  Q
    |||||||||||||||||||||||||||||||    
T  15906198 tttataatggctttaccatttcgtctatcta 15906168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 18216568 - 18216606
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  18216568 tttataatggctttgccatttcgtctatctacaaaaaaa 18216606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 39606502 - 39606544
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaagaaa 60  Q
    |||||||||||||| |||||||||||||||||  |||||||||    
T  39606502 tttataatggctttgccatttcgtctatctaccaaaaaagaaa 39606544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 52492712 - 52492674
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  52492712 tttataatgactttatcatttcgtctatctacagaaaaa 52492674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 12282711 - 12282748
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaa 55  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  12282711 tttataatggctttgccatttcgtctatctacaaaaaa 12282748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 20164104 - 20164064
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaaga 58  Q
    |||||||||||||| |||||||||||||||||  |||||||    
T  20164104 tttataatggctttgccatttcgtctatctaccaaaaaaga 20164064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 38619057 - 38619017
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    ||||||||||||  ||||||||||||||| |||||||||||    
T  38619057 ggtggcatttagaatgggaaggggaaagagttttccaccat 38619017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 42695705 - 42695673
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||| |||||||||||||||||    
T  42695705 atttataatggcttttccatttcgtctatctac 42695673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 46357885 - 46357917
Alignment:
Q  265 ttagggtgggaaggggaaagatttttccaccat 297  Q
    ||||||||||||||||||| |||||||||||||    
T  46357885 ttagggtgggaaggggaaatatttttccaccat 46357917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 46358657 - 46358617
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    ||||||||||||||||||| ||| ||||||||| |||||||    
T  46358657 ggtggcatttagggtgggatgggaaaagattttcccaccat 46358617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 48314263 - 48314295
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    |||||||||||||||||||||| ||||||||||    
T  48314263 atttataatggctttaccattttgtctatctac 48314295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 9378729 - 9378769
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9378729 ggtggcatttagggtgggaaggggaaagatttttccaccat 9378769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 9379844 - 9379806
Alignment:
Q  256 tggtggcatttagggtgggaaggggaaagatttttccac 294  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  9379844 tggtggcatttagggtgggatggggaaagatttttccac 9379806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 29151680 - 29151711
Alignment:
Q  18 tttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||||||||||||||||||||    
T  29151680 tttataatggctttaccatttcgtctatctac 29151711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 6369624 - 6369654
Alignment:
Q  18 tttataatggctttaccatttcgtctatcta 48  Q
    |||||||||||||||||||||||||||||||    
T  6369624 tttataatggctttaccatttcgtctatcta 6369654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 6378089 - 6378119
Alignment:
Q  18 tttataatggctttaccatttcgtctatcta 48  Q
    |||||||||||||||||||||||||||||||    
T  6378089 tttataatggctttaccatttcgtctatcta 6378119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 8856372 - 8856410
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  8856372 tttataatggctttgccatttcgtctatctacaaaaaaa 8856410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 35376891 - 35376853
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  35376891 tttataatggctttgccatttcgtctatctacaaaaaaa 35376853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 38678194 - 38678156
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  38678194 tttataatggctttgccatttcgtctatctacaaaaaaa 38678156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 40013361 - 40013399
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  40013361 tttataatggctttgccatttcgtctatctacaaaaaaa 40013399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 47086331 - 47086301
Alignment:
Q  18 tttataatggctttaccatttcgtctatcta 48  Q
    |||||||||||||||||||||||||||||||    
T  47086331 tttataatggctttaccatttcgtctatcta 47086301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 7312485 - 7312453
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    |||||||| ||||||||||||||||||||||||    
T  7312485 atttataacggctttaccatttcgtctatctac 7312453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 51491708 - 51491749
Alignment:
Q  256 tggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  51491708 tggtggtatttagggtgggaaggggaaagatttttccaccat 51491749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 42147596 - 42147556
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccat 42147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 12948906 - 12948944
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  12948906 tttataatggctttgccatttcgtctatctacagaaaaa 12948944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 50306571 - 50306529
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccatag 299  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccatag 50306529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 10343329 - 10343372
Alignment:
Q  256 tggtggcatttagggtgggaaggggaaagatttttccaccatag 299  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  10343329 tggtggcatttagggtgggtgagggaaagatttttccaccatag 10343372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 32946384 - 32946353
Alignment:
Q  18 tttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||||||||||||||||||||    
T  32946384 tttataatggctttaccatttcgtctatctac 32946353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 8508029 - 8508067
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  8508029 tttataatggctttgccatttcgtctatctaccgaaaaa 8508067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 9610030 - 9610068
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  9610030 tttataatggctttgccatttcgtctatctacaaaaaaa 9610068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 13777569 - 13777607
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  13777569 tttataatggctttgccatttcgtctatctacaaaaaaa 13777607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 30703188 - 30703226
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  30703188 tttataatggctttgccatttcgtctatctacaaaaaaa 30703226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 32355864 - 32355906
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccatag 299  Q
    |||| ||||||||||||| | ||||||||||||||||||||||    
T  32355864 ggtgacatttagggtgggtaagggaaagatttttccaccatag 32355906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 32597376 - 32597346
Alignment:
Q  18 tttataatggctttaccatttcgtctatcta 48  Q
    |||||||||||||||||||||||||||||||    
T  32597376 tttataatggctttaccatttcgtctatcta 32597346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 43968020 - 43968058
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  43968020 tttataatggctttatcatttcgtctatctacaaaaaaa 43968058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 47410783 - 47410745
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  47410783 tttataatggctttgccatttcgtctatctaccgaaaaa 47410745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 1242314 - 1242358
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaagaaata 62  Q
    |||||||||||||| |||||||||||||||||  ||||| |||||    
T  1242314 tttataatggctttgccatttcgtctatctaccaaaaaaaaaata 1242358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 14868887 - 14868855
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||| |||||||||||||||||    
T  14868887 atttataatggctttgccatttcgtctatctac 14868855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 67247 - 67287
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccat 67287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 1488534 - 1488492
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccatag 299  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  1488534 ggtggcatttaggatgggaaggggaaagagttttccaccatag 1488492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 34744297 - 34744255
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaagaaa 60  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  34744297 tttataatggctttgccattttgtctatctacagaaaaagaaa 34744255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 36442403 - 36442441
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  36442403 tttataatggctttaccatttcgtctatctacaaaaaaa 36442441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 10501961 - 10501920
Alignment:
Q  256 tggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  10501961 tggtggcatttagggtgggaagggaaaagatttttctaccat 10501920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 26738067 - 26738099
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    |||||||||||||||||||||||||||||||||    
T  26738067 atttataatggctttaccatttcgtctatctac 26738099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 10500953 - 10500992
Alignment:
Q  258 gtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  10500953 gtggcatttagggtgggaatggaaaagatttttccaccat 10500992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 18040233 - 18040264
Alignment:
Q  18 tttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||||||||||||||||||||    
T  18040233 tttataatggctttaccatttcgtctatctac 18040264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 25199143 - 25199181
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  25199143 tttataatggctttgccatttcgtctatctacaaaaaaa 25199181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 26732906 - 26732873
Alignment:
Q  17 atttataatggctttaccatttcgtctatctaca 50  Q
    |||||||||||||||||||||||| |||||||||    
T  26732906 atttataatggctttaccatttcgactatctaca 26732873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 10926118 - 10926086
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    |||||||||||||||| ||||||||||||||||    
T  10926118 atttataatggctttatcatttcgtctatctac 10926086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 31694164 - 31694204
Alignment:
Q  259 tggcatttagggtgggaaggggaaagatttttccaccatag 299  Q
    |||||||||||||||| ||||| |||||||| |||||||||    
T  31694164 tggcatttagggtgggtagggggaagattttcccaccatag 31694204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 38544374 - 38544334
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccat 297  Q
    |||||||||||||||||||| | |||| |||||||||||||    
T  38544374 ggtggcatttagggtgggaatgagaaatatttttccaccat 38544334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 43129193 - 43129225
Alignment:
Q  18 tttataatggctttaccatttcgtctatctaca 50  Q
    |||||||||||||| ||||||||||||||||||    
T  43129193 tttataatggctttgccatttcgtctatctaca 43129225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 5626091 - 5626053
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  5626091 tttataatggctttaccatttcgtctatctacaaaaaaa 5626053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 32643755 - 32643724
Alignment:
Q  18 tttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||||||||||||||||||||    
T  32643755 tttataatggctttaccatttcgtctatctac 32643724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 2675292 - 2675330
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  2675292 tttataatggctttgccatttcgtctatctacaaaaaaa 2675330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 2959090 - 2959128
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  2959090 tttataatggctttgccatttcgtctatctacaaaaaaa 2959128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 659250 - 659283
Alignment:
Q  17 atttataatggctttaccatttcgtctatctaca 50  Q
    ||||||||||||||| ||||||||||||||||||    
T  659250 atttataatggctttgccatttcgtctatctaca 659283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 8939723 - 8939767
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaagaaata 62  Q
    |||||||||||||| |||||||||||||||| | ||||| |||||    
T  8939723 tttataatggctttgccatttcgtctatctaaaaaaaaaaaaata 8939767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 9063007 - 9062975
Alignment:
Q  18 tttataatggctttaccatttcgtctatctaca 50  Q
    |||||||||||||| ||||||||||||||||||    
T  9063007 tttataatggctttgccatttcgtctatctaca 9062975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 21513170 - 21513202
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||| |||||||||||||||||    
T  21513170 atttataatggctttgccatttcgtctatctac 21513202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 23383087 - 23383055
Alignment:
Q  18 tttataatggctttaccatttcgtctatctaca 50  Q
    |||||||||||||| ||||||||||||||||||    
T  23383087 tttataatggctttgccatttcgtctatctaca 23383055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 33859500 - 33859532
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    |||||||||||||||||||||||||||||||||    
T  33859500 atttataatggctttaccatttcgtctatctac 33859532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 51564419 - 51564387
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    |||||||||||||||||||||||||||||||||    
T  51564419 atttataatggctttaccatttcgtctatctac 51564387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 42154168 - 42154137
Alignment:
Q  18 tttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||||||||||||||||||||    
T  42154168 tttataatggctttaccatttcgtctatctac 42154137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 5825334 - 5825376
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccatag 299  Q
    |||||||||||||||||||| |||||||| ||| |||||||||    
T  5825334 ggtggcatttagggtgggaatgggaaagagtttcccaccatag 5825376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 23974673 - 23974635
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  23974673 tttataatggctttgccatttcgtctatctacaaaaaaa 23974635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 24712185 - 24712223
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  24712185 tttataatggctttgccatttcgtctatctacaaaaaaa 24712223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 50779822 - 50779784
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  50779822 tttataatggctttgccatttcgtctatctacaaaaaaa 50779784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 55853358 - 55853320
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  55853358 tttataatggctttaccgtttcgtctatctacaaaaaaa 55853320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 45534028 - 45534069
Alignment:
Q  257 ggtggcatttagggtgggaaggggaaagatttttccaccata 298  Q
    |||||||||||||||||| ||||| |||||||| ||||||||    
T  45534028 ggtggcatttagggtgggtagggggaagattttcccaccata 45534069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 12821260 - 12821304
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaagaaata 62  Q
    |||||||||||||| |||||||||||||||||  ||||| |||||    
T  12821260 tttataatggctttgccatttcgtctatctaccaaaaaaaaaata 12821304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 35828372 - 35828404
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    ||||||||||||||| |||||||||||||||||    
T  35828372 atttataatggctttgccatttcgtctatctac 35828404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 36608097 - 36608129
Alignment:
Q  18 tttataatggctttaccatttcgtctatctaca 50  Q
    |||||||||||||| ||||||||||||||||||    
T  36608097 tttataatggctttgccatttcgtctatctaca 36608129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 90666 - 90704
Alignment:
Q  18 tttataatggctttaccatttcgtctatctacagaaaaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  90666 tttataatggctttgccatttcgtctatctacaaaaaaa 90704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 6875 - 6907
Alignment:
Q  17 atttataatggctttaccatttcgtctatctac 49  Q
    ||||||||| |||||||||||||||||||||||    
T  6875 atttataatagctttaccatttcgtctatctac 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University