View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5955_high_4 (Length: 391)
Name: NF5955_high_4
Description: NF5955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5955_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 44692660 - 44692289
Alignment:
| Q |
1 |
aagacgtaccgtaaggaaaaaggtaggctttcttaaacacttattgacctcttttggagaataattaatgtaaattatgaacagaaactgagcataccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44692660 |
aagacgtaccgtaaggaaaaaggtaggctttcttaaacacttattgacctcttttggagaataattcatgtaaattatgaacagaaactgagcataccaa |
44692561 |
T |
|
| Q |
101 |
gtttaactcatataaatataatagc----aatgttgtggggacatatatctcatggttttaaaataacttaccagcattgatttcattcatagccgtctt |
196 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
44692560 |
gtttaactcatataaatataatagctatatatgttgtggggac----atctcatggttttaaaaaaacttaccagcattgatttcattcatggccgtctt |
44692465 |
T |
|
| Q |
197 |
cacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttgagacgattcaaagttatataaatcc |
296 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
44692464 |
cacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcggacatagcctgttgcgacgattcaaagttatataaatcc |
44692365 |
T |
|
| Q |
297 |
tccgttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttcttccacag |
372 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44692364 |
tcagttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcacgttcttcttccacag |
44692289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 174 - 372
Target Start/End: Complemental strand, 44632315 - 44632121
Alignment:
| Q |
174 |
ttgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttgag |
273 |
Q |
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|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
44632315 |
ttgatttcattcatagcccgcttcacatgctcatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcctgttgag |
44632216 |
T |
|
| Q |
274 |
acgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaa-aacaaaa--aagaaccttctcaagttcttcttccac |
370 |
Q |
| |
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||||||||||| ||||| |||| |||||||||||| | |||||||||||||||| ||||||| || |||||||||||||||||||||||| |
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| T |
44632215 |
gttattcaaagttacataaaccctcagttcaccttatc-------aataaatactaattgtaataacaaaaataaaaaccttctcaagttcttcttccac |
44632123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 144 - 372
Target Start/End: Original strand, 44636542 - 44636768
Alignment:
| Q |
144 |
atctcatggttttaaaataacttaccagcattgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaattt |
243 |
Q |
| |
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|||||||||| |||||| ||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
44636542 |
atctcatggtcttaaaaaaacataccggcattgatttcattcatagcccgtttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaattt |
44636641 |
T |
|
| Q |
244 |
catatccataagcgggcatagcctgttgagacgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaa-a |
342 |
Q |
| |
|
|||| |||||||| | ||||||||||| ||||||| |||||||| |||||||||| ||||||||||||| |||| | |||| |||| ||||||| | |
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| T |
44636642 |
catagccataagctgacatagcctgttaagacgatccaaagttacataaatcctcagttcaccttatcaacaaat-gaaaattgtaat--aaaaacaaca |
44636738 |
T |
|
| Q |
343 |
aaagaaccttctcaagttcttcttccacag |
372 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
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| T |
44636739 |
aaaaaaccttctcaagttcttcttccacag |
44636768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 166 - 372
Target Start/End: Complemental strand, 44653796 - 44653599
Alignment:
| Q |
166 |
taccagcattgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagc |
265 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
44653796 |
tacctgcattgatttcattcatagcccgcttcacatggacatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagc |
44653697 |
T |
|
| Q |
266 |
ctgttgagacgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttct |
365 |
Q |
| |
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||||||||| |||||||||||| |||||||| | ||||||| |||| | |||||| || | || ||||||||||||||||||||||||||||| |
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| T |
44653696 |
ctgttgagatgattcaaagttacataaatccacagttcaccatatc-------aataaataatattcgt--aacaaaaaagaaccttctcaagttcttct |
44653606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 166 - 372
Target Start/End: Complemental strand, 44682804 - 44682608
Alignment:
| Q |
166 |
taccagcattgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagc |
265 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
44682804 |
tacctgcattgatttcattcatagcccgcttcacatggacatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagc |
44682705 |
T |
|
| Q |
266 |
ctgttgagacgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttct |
365 |
Q |
| |
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||||||||| |||||||||||| |||||||| | ||||||| ||||| ||||| | || || ||||||||||||||||||||||||||||| |
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| T |
44682704 |
ctgttgagatgattcaaagttacataaatccacagttcaccatatcaataaataat--------atcgt--aacaaaaaagaaccttctcaagttcttct |
44682615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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