View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5955_low_2 (Length: 485)
Name: NF5955_low_2
Description: NF5955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5955_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 34829493 - 34829961
Alignment:
| Q |
1 |
aataaataatactaacaaaccatcaacttctatgtagctatattgtcaccattatacattaataatctacgaagaagtttttcacatagctaatttctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34829493 |
aataaataatactaacaaaccatcaacttctatgtagctatattgtcaccattatacattaataatctacgaagaagtttttcacatagctaatttctgc |
34829592 |
T |
|
| Q |
101 |
tcaacccagctttgtttgcatccattgccaatcgaataaaggaagagccatcaccttgcataaccaagtttggaataaattgggattcagagcttcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34829593 |
tcaacccagctttgtttgcatccattgccaatcgaataaaggaagagccatcaccttgcataaccaagtttggaataaattgggattcagagcttcccaa |
34829692 |
T |
|
| Q |
201 |
attatgaccaacatggtcataatttatgaaaggattgtagtattccataggaggagcttcattatcatcatggacatttccttgatttatcatcagttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34829693 |
attatgaccaacatggtcataatttatgaaaggattgtagtattccataggaggagcttcattatcatcatggacatttccttgatttatcatcagttca |
34829792 |
T |
|
| Q |
301 |
ttttcataactagtagtaaccttgataatattggaattattaccaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34829793 |
ttttcataactagtagtaaccttgataatattggaattattaccaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccat |
34829892 |
T |
|
| Q |
401 |
ctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttctttt |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34829893 |
ctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttctttt |
34829961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 464
Target Start/End: Complemental strand, 30506037 - 30505912
Alignment:
| Q |
339 |
attaccaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgc |
438 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| || || || || || |||||||| | || |||||||||||||||| ||| ||||| || || |||||| |
|
|
| T |
30506037 |
attaccaccacactgtcttggttgagtttgatagaaaactttggacacaactaacactccttctttctcttcttcatcactcccaagatgatactgatgc |
30505938 |
T |
|
| Q |
439 |
atcacccaattggtcttctcaggctt |
464 |
Q |
| |
|
||||||||||| || ||||| ||||| |
|
|
| T |
30505937 |
atcacccaatttgttttctctggctt |
30505912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 378 - 469
Target Start/End: Original strand, 28948725 - 28948816
Alignment:
| Q |
378 |
ctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttctttt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28948725 |
ctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttctttt |
28948816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 458
Target Start/End: Complemental strand, 43015288 - 43015191
Alignment:
| Q |
361 |
tgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctc |
458 |
Q |
| |
|
||||| || ||||| | |||||||||||| | || || |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
43015288 |
tgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctc |
43015191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 458
Target Start/End: Complemental strand, 4235894 - 4235787
Alignment:
| Q |
351 |
ttgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattg |
450 |
Q |
| |
|
||||| ||| ||||| ||||| || | ||||||| |||| ||||| |||||| | ||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
4235894 |
ttgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaatta |
4235795 |
T |
|
| Q |
451 |
gtcttctc |
458 |
Q |
| |
|
|||||||| |
|
|
| T |
4235794 |
gtcttctc |
4235787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 464
Target Start/End: Complemental strand, 38887192 - 38887070
Alignment:
| Q |
342 |
accaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatc |
441 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| || || || ||||| || ||||| || |||||||| |||||||| | ||||| |||||||| ||||| |
|
|
| T |
38887192 |
accaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcata |
38887093 |
T |
|
| Q |
442 |
acccaattggtcttctcaggctt |
464 |
Q |
| |
|
|||||||| || ||||| ||||| |
|
|
| T |
38887092 |
acccaatttgttttctctggctt |
38887070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University