View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5957_high_1 (Length: 1103)

Name: NF5957_high_1
Description: NF5957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5957_high_1
NF5957_high_1
[»] chr3 (28 HSPs)
chr3 (7-1087)||(47248796-47249874)
chr3 (923-1087)||(47242881-47243045)
chr3 (22-252)||(47242366-47242596)
chr3 (935-1087)||(47254150-47254302)
chr3 (351-458)||(47253966-47254073)
chr3 (365-453)||(47242723-47242811)
chr3 (677-751)||(21367685-21367759)
chr3 (617-751)||(34610724-34610858)
chr3 (800-872)||(35959585-35959657)
chr3 (677-751)||(37389201-37389275)
chr3 (618-734)||(26878235-26878351)
chr3 (685-736)||(3194250-3194301)
chr3 (795-870)||(44747516-44747591)
chr3 (503-577)||(24778609-24778682)
chr3 (630-750)||(46778122-46778241)
chr3 (502-578)||(48532165-48532241)
chr3 (695-754)||(31403373-31403432)
chr3 (704-751)||(33883755-33883802)
chr3 (618-751)||(38902084-38902216)
chr3 (503-578)||(40991639-40991713)
chr3 (933-980)||(47265980-47266027)
chr3 (684-750)||(402527-402593)
chr3 (669-751)||(2719486-2719568)
chr3 (787-849)||(28240228-28240290)
chr3 (696-750)||(46031009-46031063)
chr3 (798-847)||(12704123-12704172)
chr3 (817-870)||(30956772-30956825)
chr3 (817-870)||(30972584-30972637)
[»] chr2 (30 HSPs)
chr2 (611-752)||(7928210-7928352)
chr2 (802-877)||(9395004-9395079)
chr2 (685-751)||(4606943-4607009)
chr2 (618-751)||(26143561-26143692)
chr2 (687-751)||(3611244-3611308)
chr2 (669-751)||(750688-750770)
chr2 (677-751)||(16451136-16451210)
chr2 (781-877)||(43570290-43570384)
chr2 (679-749)||(36043924-36043994)
chr2 (612-745)||(15305698-15305831)
chr2 (785-870)||(28792314-28792399)
chr2 (800-877)||(41407165-41407242)
chr2 (669-738)||(44606081-44606149)
chr2 (634-750)||(7035502-7035618)
chr2 (677-737)||(28677638-28677697)
chr2 (703-751)||(35379020-35379068)
chr2 (694-738)||(40682390-40682434)
chr2 (677-737)||(43570446-43570505)
chr2 (684-751)||(40279285-40279352)
chr2 (684-751)||(40279355-40279422)
chr2 (677-751)||(8017452-8017525)
chr2 (788-870)||(9174695-9174777)
chr2 (687-737)||(9174847-9174897)
chr2 (694-751)||(1625918-1625975)
chr2 (817-870)||(15757812-15757865)
chr2 (612-745)||(26202052-26202185)
chr2 (803-868)||(26626759-26626824)
chr2 (694-751)||(26626891-26626948)
chr2 (694-751)||(29316771-29316827)
chr2 (688-737)||(41809235-41809283)
[»] chr4 (19 HSPs)
chr4 (796-870)||(44863077-44863151)
chr4 (618-711)||(55437134-55437227)
chr4 (684-751)||(17822850-17822917)
chr4 (502-609)||(22420716-22420822)
chr4 (620-751)||(52315118-52315249)
chr4 (618-750)||(27043749-27043881)
chr4 (788-868)||(44138442-44138522)
chr4 (787-847)||(23277317-23277377)
chr4 (686-738)||(25332806-25332858)
chr4 (502-578)||(25575032-25575107)
chr4 (529-608)||(29209201-29209279)
chr4 (795-850)||(42641747-42641802)
chr4 (669-751)||(13126546-13126628)
chr4 (717-751)||(16199999-16200033)
chr4 (693-751)||(42685442-42685499)
chr4 (498-547)||(15665339-15665388)
chr4 (677-737)||(28615366-28615426)
chr4 (827-872)||(42404138-42404183)
chr4 (502-547)||(48174092-48174137)
[»] chr7 (22 HSPs)
chr7 (781-870)||(46139823-46139912)
chr7 (671-720)||(7241308-7241357)
chr7 (668-751)||(7244698-7244780)
chr7 (676-751)||(34035935-34036010)
chr7 (800-870)||(33128628-33128698)
chr7 (667-733)||(36537944-36538009)
chr7 (669-738)||(20526899-20526968)
chr7 (676-736)||(15740389-15740448)
chr7 (667-751)||(19022553-19022637)
chr7 (795-855)||(19718903-19718963)
chr7 (802-871)||(20428335-20428406)
chr7 (795-867)||(33552935-33553007)
chr7 (695-751)||(46139950-46140006)
chr7 (795-875)||(47795833-47795913)
chr7 (502-576)||(1011256-1011329)
chr7 (800-870)||(9210499-9210569)
chr7 (669-751)||(20526464-20526546)
chr7 (531-609)||(22174177-22174254)
chr7 (677-751)||(33678798-33678872)
chr7 (502-608)||(40008430-40008535)
chr7 (817-870)||(38138625-38138678)
chr7 (704-745)||(47559606-47559647)
[»] chr5 (21 HSPs)
chr5 (800-871)||(24030531-24030602)
chr5 (684-751)||(39105482-39105549)
chr5 (677-751)||(1464998-1465072)
chr5 (613-750)||(10639972-10640109)
chr5 (694-747)||(42099867-42099920)
chr5 (684-751)||(12459987-12460053)
chr5 (796-870)||(28776856-28776930)
chr5 (695-747)||(40848767-40848819)
chr5 (816-875)||(3520297-3520356)
chr5 (614-751)||(11700181-11700317)
chr5 (817-870)||(32372495-32372548)
chr5 (795-875)||(9202862-9202942)
chr5 (704-751)||(4014429-4014476)
chr5 (694-749)||(9202743-9202798)
chr5 (608-646)||(43301001-43301039)
chr5 (702-751)||(7319011-7319060)
chr5 (698-751)||(7984987-7985040)
chr5 (817-870)||(13697905-13697958)
chr5 (800-873)||(26005367-26005440)
chr5 (817-870)||(40426633-40426686)
chr5 (787-875)||(42100195-42100286)
[»] chr1 (33 HSPs)
chr1 (696-751)||(38503462-38503517)
chr1 (669-743)||(3887602-3887676)
chr1 (693-751)||(15784347-15784405)
chr1 (670-751)||(7136970-7137050)
chr1 (667-738)||(47498807-47498878)
chr1 (671-749)||(27145708-27145785)
chr1 (796-870)||(45975571-45975645)
chr1 (795-870)||(5894277-5894352)
chr1 (693-751)||(7069319-7069377)
chr1 (669-751)||(51695465-51695547)
chr1 (668-749)||(37473423-37473504)
chr1 (669-733)||(4481966-4482029)
chr1 (802-870)||(5720852-5720920)
chr1 (513-609)||(30396739-30396834)
chr1 (802-870)||(41195325-41195393)
chr1 (704-755)||(15361054-15361105)
chr1 (550-609)||(15577595-15577654)
chr1 (694-749)||(38116073-38116128)
chr1 (787-850)||(38116291-38116354)
chr1 (827-870)||(46423151-46423194)
chr1 (620-750)||(1432534-1432664)
chr1 (677-751)||(3233993-3234067)
chr1 (694-748)||(5886990-5887043)
chr1 (625-751)||(6102172-6102297)
chr1 (503-577)||(21769711-21769784)
chr1 (795-869)||(27146362-27146436)
chr1 (693-751)||(46252677-46252734)
chr1 (796-870)||(47498958-47499032)
chr1 (694-751)||(27820332-27820389)
chr1 (513-578)||(29128991-29129056)
chr1 (706-751)||(34290254-34290299)
chr1 (797-850)||(37841899-37841952)
chr1 (817-870)||(43990119-43990172)
[»] chr8 (15 HSPs)
chr8 (677-735)||(32840964-32841022)
chr8 (667-738)||(33808334-33808405)
chr8 (670-750)||(9956785-9956865)
chr8 (694-749)||(3536940-3536995)
chr8 (611-749)||(1057989-1058126)
chr8 (700-750)||(1113077-1113127)
chr8 (677-751)||(43504769-43504842)
chr8 (667-720)||(779030-779082)
chr8 (669-750)||(10120775-10120856)
chr8 (611-751)||(30251366-30251506)
chr8 (611-738)||(10758169-10758296)
chr8 (503-578)||(45419443-45419517)
chr8 (817-875)||(40980996-40981054)
chr8 (799-869)||(41475178-41475248)
chr8 (514-607)||(23492213-23492305)
[»] chr6 (14 HSPs)
chr6 (800-870)||(6538388-6538458)
chr6 (671-748)||(2455280-2455357)
chr6 (669-738)||(2735100-2735169)
chr6 (677-750)||(9912169-9912242)
chr6 (550-608)||(3963967-3964025)
chr6 (677-735)||(33832252-33832309)
chr6 (667-745)||(34910377-34910455)
chr6 (795-875)||(264247-264327)
chr6 (676-736)||(1575928-1575987)
chr6 (676-752)||(31624107-31624182)
chr6 (787-875)||(35069428-35069516)
chr6 (695-738)||(34882417-34882460)
chr6 (677-751)||(31813179-31813253)
chr6 (611-656)||(35069524-35069569)
[»] scaffold0608 (1 HSPs)
scaffold0608 (669-733)||(9608-9671)
[»] scaffold0699 (1 HSPs)
scaffold0699 (820-870)||(6785-6835)
[»] scaffold0018 (1 HSPs)
scaffold0018 (812-870)||(157978-158036)


Alignment Details
Target: chr3 (Bit Score: 1021; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 1021; E-Value: 0
Query Start/End: Original strand, 7 - 1087
Target Start/End: Original strand, 47248796 - 47249874
Alignment:
Q  7 gacatcatcaactaatagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaagggaaacataacagttgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47248796 gacatcatcaactaatagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaagggaaacataacagttgc 47248895  T
Q  107 acataaacatggtcagtccaattatttcatttcagcaaggatttatatattcaactttacagtaaaaaatgtccttacttaagaaatgttatcacattag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47248896 acataaacatggtcagtccaattatttcatttcagcaaggatttatatattcaactttacagtaataaatgtccttacttaagaaatgttatcacattag 47248995  T
Q  207 ggttgcccatttcaaagtttagggacttaagtatgtcagcttccatttttaatacctacggtagcaggaagacaacaacatacatgagaaacaaagcaac 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47248996 ggttgcccatttcaaagtttagggacttaagtatgtcagcttccatttttaatacctacggtagcaggaagacaacaacatacatgagaaacaaagcaac 47249095  T
Q  307 acagtaagaaatgaaatgtacaaattttgattcaagagcaatgacatgaataggatatttacctcttccaggtcataggtgttatcagtaatttggcaga 406  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249096 acagtaagaaataaaatgtacaaattttgattcaagagcaatgacatgaataggatatttacctcttccaggtcataggtgttatcagtaatttggcaga 47249195  T
Q  407 aatccactgcctttggtggggtaatttcttcatactttctgcatatttaaaagagataaatttaaatgcttaagcaaaatgacatagcaacaactaacaa 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249196 aatccactgcctttggtggggtaatttcttcatactttctgcatatttaaaagagataaatttaaatgcttaagcaaaatgacatagcaacaactaacaa 47249295  T
Q  507 caaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaat 606  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  47249296 caaccgccaagcctcatcacactaagtggggtctgctaca-ttgatcaaacaataccaaaatgttctatcatccatcttatctctatcaaattcattaat 47249394  T
Q  607 ctccaagggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgt 706  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  47249395 ctctaagggcatgtttgtattggcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaacttatgaaaaccacttatgaca-tgt 47249493  T
Q  707 tcataagttgtttttggcttattttcataagtcctccaagatagccaatacaaaaataatttaatttcactttatatatgttgctattgaaatagcttat 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249494 tcataagttgtttttggcttattttcataagtcctccaagatagccaatacaaaaataatttaatttcactttatatatgttgctattgaaatagcttat 47249593  T
Q  807 acatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaagatttttgtaaaaatacataacaacattt 906  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  47249594 acatgagcatttatcatgataagtgcttgtgttataagctgcaaataagctatttatccacacaaggcctagatttttgtaaaaatacataacaacattt 47249693  T
Q  907 gtaagaatataaaaacagttgttgagggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagata 1006  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249694 gtaagaatataaaaacagttgttgagggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagata 47249793  T
Q  1007 agaatctgtcaatgtatgaaactgacagatgaagtgtctcgggaagaagcttgtattcatctgcaacctcaactaaccaat 1087  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249794 agaatctgtcaatgtatgaaactgacagatgaagtgtctcgggaagaagcttgtattcatctgcaacctcaactaaccaat 47249874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 923 - 1087
Target Start/End: Original strand, 47242881 - 47243045
Alignment:
Q  923 agttgttgagggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgta 1022  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||   ||||||||||||| ||||||||    
T  47242881 agttgttgagatcttacgatgcaatgagcatggatgaaacaccaagcaactgaagcttagatctaatgataggttggttagataagaatctatcaatgta 47242980  T
Q  1023 tgaaactgacagatgaagtgtctcgggaagaagcttgtattcatctgcaacctcaactaaccaat 1087  Q
    |||||| || |||||||| || || ||||||||| |||||||||||||||||||||| |||||||    
T  47242981 tgaaacagagagatgaagggtttctggaagaagcgtgtattcatctgcaacctcaaccaaccaat 47243045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 47242366 - 47242596
Alignment:
Q  22 tagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaagggaaacataacagttgcacataaacatggtca 121  Q
    |||||||||||||| | ||||| | |||||| |||||||| |||||||||||| ||| ||||||||| | || || | ||  || | |||||||   | |    
T  47242366 tagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaactcctgaaatg-aatcacagcaagtgaaaataaacagaatta 47242464  T
Q  122 gtccaattat-ttcatttcagcaaggatttatatattcaactttacagtaaaaaatgtccttacttaagaaatgttatcacattagggttgcccatttca 220  Q
    |||||||||  ||||||||| ||||| |||| |||||||| || ||| ||||||||||  |||||| |||||||| || |||||||||||||||||||||    
T  47242465 gtccaattaacttcatttcaacaaggctttagatattcaaattcacaataaaaaatgtatttactttagaaatgtgatgacattagggttgcccatttca 47242564  T
Q  221 aagtttagggacttaagtatgtcagcttccat 252  Q
    ||||| ||||  || |||||||||||||||||    
T  47242565 aagttcagggttttgagtatgtcagcttccat 47242596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 935 - 1087
Target Start/End: Original strand, 47254150 - 47254302
Alignment:
Q  935 cttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgtatgaaactgacag 1034  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||  ||| | || | ||||||||||||||||||||| |  ||    
T  47254150 cttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattggacaggaatctgtcaatgtatgaaacagcaag 47254249  T
Q  1035 atgaagtgtctcgggaagaagcttgtattcatctgcaacctcaactaaccaat 1087  Q
    |||||| || |  || |||||||||||||| || ||||||||||| |||||||    
T  47254250 atgaagggtttgagggagaagcttgtattcttcagcaacctcaaccaaccaat 47254302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 351 - 458
Target Start/End: Original strand, 47253966 - 47254073
Alignment:
Q  351 catgaataggatatttacctcttccaggtcataggtgttatcagtaatttggcagaaatccactgcctttggtggggtaatttcttcatactttctgcat 450  Q
    |||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||| || |||||||||||||  ||||||||||||||||||||     
T  47253966 catgaatatgatatttacctgtttcagctcataggtgttatcagtaatctggcagaaatcaacagcctttggtggggagatttcttcatactttctgcaa 47254065  T
Q  451 atttaaaa 458  Q
    ||||||||    
T  47254066 atttaaaa 47254073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 365 - 453
Target Start/End: Original strand, 47242723 - 47242811
Alignment:
Q  365 ttacctcttccaggtcataggtgttatcagtaatttggcagaaatccactgcctttggtggggtaatttcttcatactttctgcatatt 453  Q
    ||||||| || || ||||| ||||||||||| |||||||||||||| |  |||||||||||||| |||||||||||||| |||||||||    
T  47242723 ttacctcgtcaagatcatatgtgttatcagtgatttggcagaaatctatggcctttggtggggtgatttcttcatacttcctgcatatt 47242811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 677 - 751
Target Start/End: Complemental strand, 21367759 - 21367685
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| ||||||||  |||||||||||||||| ||| ||||||  |||||||||||||||| ||||||||||||    
T  21367759 agaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagc 21367685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 617 - 751
Target Start/End: Original strand, 34610724 - 34610858
Alignment:
Q  617 atgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttg 716  Q
    |||||||||| | ||||||||||||||| | ||||||||| ||   |  || | ||||  |||||| ||||||||  ||||||||||||||||||||| |    
T  34610724 atgtttgtatggacttatttgagcttatctactgacataagttttgtacaactatttgggagaacttatgaaaactgcttatgacattgttcataagtgg 34610823  T
Q  717 tttttggcttattttcataagtcctccaagatagc 751  Q
    ||||  ||| |||||||||||| | ||||||||||    
T  34610824 ttttcagctgattttcataagttcgccaagatagc 34610858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 800 - 872
Target Start/End: Original strand, 35959585 - 35959657
Alignment:
Q  800 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaag 872  Q
    ||||||||||| |||  ||||||||| ||| ||||||| |||||||||||| |||||| ||||||||||||||    
T  35959585 agcttatacataagctcttatcatgataagagcttgtgatataagctgcaaataagctgtttatccaaacaag 35959657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 677 - 751
Target Start/End: Complemental strand, 37389275 - 37389201
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| |||||||| ||||||||||||||||| | | || |||| ||||||| |||||||| ||||||||||||    
T  37389275 agaacttatgaaaacaacttatgacattgttcaaatgctgcttttagcttattctcataagtactccaagatagc 37389201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 618 - 734
Target Start/End: Complemental strand, 26878351 - 26878235
Alignment:
Q  618 tgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgt 717  Q
    |||||| |||| |||||| |||||||| | ||||||||| ||   ||||| ||||||| ||||||  ||||||   |||||||||||||||||||  |||    
T  26878351 tgtttgaattggcttattcgagcttatctactgacataagttgcgtgaaactgtttgagagaacttgtgaaaatagcttatgacattgttcataaactgt 26878252  T
Q  718 ttttggcttattttcat 734  Q
    |||  ||||||||||||    
T  26878251 tttcagcttattttcat 26878235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 685 - 736
Target Start/End: Original strand, 3194250 - 3194301
Alignment:
Q  685 tgaaaaccacttatgacattgttcataagttgtttttggcttattttcataa 736  Q
    ||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||    
T  3194250 tgaaaacaacttatgacattgatcataagctgtttttagcttattttcataa 3194301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 795 - 870
Target Start/End: Original strand, 44747516 - 44747591
Alignment:
Q  795 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    |||||| ||||||||| || | ||| ||||  | |||||||||||||||| ||||| |||||||||||||||||||    
T  44747516 gaaataacttatacataagaacttaccatggtaggtgcttgtgttataagttgcaaataagctatttatccaaaca 44747591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 503 - 577
Target Start/End: Original strand, 24778609 - 24778682
Alignment:
Q  503 acaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatca 577  Q
    |||||||| ||||||||| ||| |||||||||||||| |||||| | |||||||  |||||| ||||||||||||    
T  24778609 acaacaacagccaagccttatcccactaagtggggtcggctaca-tggatcaaattacaccataatgttctatca 24778682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 630 - 750
Target Start/End: Original strand, 46778122 - 46778241
Alignment:
Q  630 cttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttatt 729  Q
    ||||||||||||||| |  || ||||||||   |||||  |||||  |||||| |||||||| |||||||||||| |||||||||| | ||  ||||| |    
T  46778122 cttatttgagcttatttagtggcataaattttgtgaaaccgtttgggagaacttatgaaaacaacttatgacatttttcataagttttgttcagctta-t 46778220  T
Q  730 ttcataagtcctccaagatag 750  Q
    |||||||||  ||||||||||    
T  46778221 ttcataagttgtccaagatag 46778241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 502 - 578
Target Start/End: Complemental strand, 48532241 - 48532165
Alignment:
Q  502 aacaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcat 578  Q
    |||||||||  |||||||| ||| |||||||||||||| |||||||| |||||||  || ||| | |||||||||||    
T  48532241 aacaacaacaaccaagccttatcccactaagtggggtcggctacattggatcaaatgacgccatagtgttctatcat 48532165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 695 - 754
Target Start/End: Complemental strand, 31403432 - 31403373
Alignment:
Q  695 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagccaa 754  Q
    |||| ||||||||||||||||||||   ||||||||||| | || |||||||||||||||    
T  31403432 ttataacattgttcataagttgtttacagcttattttcacaggttctccaagatagccaa 31403373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 704 - 751
Target Start/End: Original strand, 33883755 - 33883802
Alignment:
Q  704 tgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||||||||||||  |||||||||||||||| ||| ||||||||    
T  33883755 tgttcataagttgttttcagcttattttcataagttctctaagatagc 33883802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 618 - 751
Target Start/End: Complemental strand, 38902216 - 38902084
Alignment:
Q  618 tgtttgtattgtcttatttgagcttatatgctgacataaattaattg-aaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttg 716  Q
    |||||| |||| || |||||||||||| | ||| ||||| ||  ||| ||| |||||| ||||| | ||||||||  | |||||||||||||||| ||||    
T  38902216 tgtttgaattgcctcatttgagcttatctactggcataagtt--ttgcaaactgtttggaagaatttatgaaaacagcatatgacattgttcatacgttg 38902119  T
Q  717 tttttggcttattttcataagtcctccaagatagc 751  Q
    ||||   ||||||||||| ||| || |||||||||    
T  38902118 ttttcaacttattttcatgagttcttcaagatagc 38902084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 503 - 578
Target Start/End: Complemental strand, 40991713 - 40991639
Alignment:
Q  503 acaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcat 578  Q
    |||||||| |||||| || ||| |||||||||||||| |||||| | |||||||  |||||| |||||||||||||    
T  40991713 acaacaacagccaagtcttatctcactaagtggggtcagctaca-tggatcaaattacaccataatgttctatcat 40991639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 933 - 980
Target Start/End: Complemental strand, 47266027 - 47265980
Alignment:
Q  933 ggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagctt 980  Q
    ||||||||||||||||  ||||||||||||||| ||||| ||||||||    
T  47266027 ggcttacgatgcaatgtacatggatgaaacacccagcaattgaagctt 47265980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 684 - 750
Target Start/End: Original strand, 402527 - 402593
Alignment:
Q  684 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 750  Q
    ||||||||  |||||||||||||||||||| ||||||  ||||| ||||| |||| || ||||||||    
T  402527 atgaaaacagcttatgacattgttcataagctgttttcagcttaatttcacaagttcttcaagatag 402593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 669 - 751
Target Start/End: Complemental strand, 2719568 - 2719486
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||| |||||| | |||||| |||||    ||||| ||||||||||| |  |||||||||||||||| ||||||||||||    
T  2719568 tgtttgagagaacttaggaaaacaacttaaactattgtccataagttgttctcagcttattttcataagttctccaagatagc 2719486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 787 - 849
Target Start/End: Complemental strand, 28240290 - 28240228
Alignment:
Q  787 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgca 849  Q
    ||||||| ||||||||||| | || |||| ||||||||| ||| ||||||| |||||||||||    
T  28240290 ttgctatcgaaatagcttaaatataagcacttatcatgataagcgcttgtgctataagctgca 28240228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 696 - 750
Target Start/End: Complemental strand, 46031063 - 46031009
Alignment:
Q  696 tatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 750  Q
    ||||||||| |||||||| ||||||  ||||||||| |||||| |||||||||||    
T  46031063 tatgacattattcataagctgttttcagcttattttaataagttctccaagatag 46031009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 798 - 847
Target Start/End: Original strand, 12704123 - 12704172
Alignment:
Q  798 atagcttatacatgagcatttatcatgacaagtgcttgtgttataagctg 847  Q
    ||||||||||||  ||  |||||||||| |||||||||||||||||||||    
T  12704123 atagcttatacacaagtgtttatcatgataagtgcttgtgttataagctg 12704172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 870
Target Start/End: Original strand, 30956772 - 30956825
Alignment:
Q  817 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||| |||  |||||| |||||||||||| |||||| ||||||||||||    
T  30956772 ttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 870
Target Start/End: Original strand, 30972584 - 30972637
Alignment:
Q  817 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||| |||  |||||| |||||||||||| |||||| ||||||||||||    
T  30972584 ttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 5e-22; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 611 - 752
Target Start/End: Original strand, 7928210 - 7928352
Alignment:
Q  611 aagggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatg-acattgttca 709  Q
    |||||| |||||| |||| ||||||||||||||| |  |||||||| ||   ||| | |||| |||||||||  |||||||  |||||| ||||||||||    
T  7928210 aagggcctgtttggattggcttatttgagcttatctattgacataagttgtgtgagactgttagaaagaacttttgaaaacagcttatggacattgttca 7928309  T
Q  710 taagttgtttttggcttattttcataagtcctccaagatagcc 752  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  7928310 taagttgttttcagcttattttcataagttctccaagatagcc 7928352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 802 - 877
Target Start/End: Complemental strand, 9395079 - 9395004
Alignment:
Q  802 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaa 877  Q
    ||||||||||||  |||||||||| ||| ||||||| ||||||| |||| |||||||| |||||||||||||||||    
T  9395079 cttatacatgagtgtttatcatgataagagcttgtgctataagccgcaaataagctatgtatccaaacaaggccaa 9395004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 685 - 751
Target Start/End: Complemental strand, 4607009 - 4606943
Alignment:
Q  685 tgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||| |||||||||||||||||| || || |||| |||||||||||||||| ||||||||||||    
T  4607009 tgaaaacaacttatgacattgttcatgagctgcttttagcttattttcataagttctccaagatagc 4606943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 618 - 751
Target Start/End: Original strand, 26143561 - 26143692
Alignment:
Q  618 tgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgt 717  Q
    |||||| |||| ||| ||||||||||| | ||||||||||||  |||| | ||||||  |||||| | |||||| ||||||| ||||||||| | ||| |    
T  26143561 tgtttggattggcttgtttgagcttatctactgacataaatt--ttgagactgtttgggagaacttacgaaaacaacttatgtcattgttcacaggttat 26143658  T
Q  718 ttttggcttattttcataagtcctccaagatagc 751  Q
    |||  |||||||||||||||| ||||||| ||||    
T  26143659 tttcagcttattttcataagttctccaagttagc 26143692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 687 - 751
Target Start/End: Complemental strand, 3611308 - 3611244
Alignment:
Q  687 aaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||| |||||||||||| |||||||  ||||||| |||||||||||||||| ||||||||||||    
T  3611308 aaaacaacttatgacattattcataaactgtttttagcttattttcataagttctccaagatagc 3611244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 669 - 751
Target Start/End: Complemental strand, 750770 - 750688
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| ||||||| |||||||   || ||||||||||||||||| ||||||  |||||||| ||||||| ||||||||||||    
T  750770 tgtttgcaagaacttatgaaaagagctaatgacattgttcataagctgttttgagcttatttgcataagttctccaagatagc 750688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 677 - 751
Target Start/End: Complemental strand, 16451210 - 16451136
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| |||||||| |||||||||||||||||| || ||||||  |||||||||||  ||| ||||||||||||    
T  16451210 agaacttatgaaaacaacttatgacattgttcatgagctgttttcagcttattttcacgagttctccaagatagc 16451136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 781 - 877
Target Start/End: Complemental strand, 43570384 - 43570290
Alignment:
Q  781 tatatgttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaa 877  Q
    ||||| || |||| ||| ||||||||||| | ||  ||||||||| ||||||||||| |||||||||||| |||||| |||| ||||||| ||||||    
T  43570384 tatattttactatagaattagcttatacaagcgc--ttatcatgataagtgcttgtgctataagctgcaaataagctgtttacccaaacacggccaa 43570290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 679 - 749
Target Start/End: Complemental strand, 36043994 - 36043924
Alignment:
Q  679 aactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 749  Q
    |||| |||||||| ||||| ||||||||||||||| ||||||| ||| | |||||||||  ||||||||||    
T  36043994 aacttatgaaaacaacttacgacattgttcataagctgtttttagctcaatttcataagctctccaagata 36043924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 612 - 745
Target Start/End: Complemental strand, 15305831 - 15305698
Alignment:
Q  612 agggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcata 711  Q
    ||||| |||||| |||| ||||||||||||||| |  |||||||| ||   ||||| ||||||  ||||||  ||| ||| ||||||| || | ||||||    
T  15305831 agggcctgtttggattggcttatttgagcttatctattgacataagttttgtgaaactgtttggtagaacttttgacaacaacttatggcaattttcata 15305732  T
Q  712 agttgtttttggcttattttcataagtcctccaa 745  Q
    |||| ||||   ||||||||||||||| ||||||    
T  15305731 agtttttttcaacttattttcataagttctccaa 15305698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 785 - 870
Target Start/End: Original strand, 28792314 - 28792399
Alignment:
Q  785 tgttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||| | |||||||||||||| ||   || | |||| | ||||||||| |||||||||||| |||||| ||||||||||||    
T  28792314 tgttgctataggaatagcttatacataagtgattgtaatgataggtgcttgtgctataagctgcaagtaagctttttatccaaaca 28792399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 800 - 877
Target Start/End: Complemental strand, 41407242 - 41407165
Alignment:
Q  800 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaa 877  Q
    ||||||||||| ||   ||||||||| ||| ||||||| ||||||||||||  ||||| |||||||||||| ||||||    
T  41407242 agcttatacataagtgcttatcatgataagcgcttgtgctataagctgcaaacaagctgtttatccaaacagggccaa 41407165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 669 - 738
Target Start/End: Original strand, 44606081 - 44606149
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 738  Q
    |||||| ||||||| |||||||| |||||||||| ||| |||||||||||||  ||| ||||||||||||    
T  44606081 tgtttggaagaacttatgaaaacaacttatgaca-tgtccataagttgttttcagctgattttcataagt 44606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 634 - 750
Target Start/End: Original strand, 7035502 - 7035618
Alignment:
Q  634 tttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 733  Q
    ||||| |||||||||| |||||| ||   ||| | |||||  ||||||| ||| ||||  |||||||||  ||||||||| ||||||  |||||||||||    
T  7035502 tttgatcttatatgctaacataagttttgtgagactgttttgaagaacttatggaaacagcttatgacacagttcataaggtgttttccgcttattttca 7035601  T
Q  734 taagtcctccaagatag 750  Q
    |||||  ||||||||||    
T  7035602 taagttttccaagatag 7035618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 677 - 737
Target Start/End: Original strand, 28677638 - 28677697
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataag 737  Q
    |||||| ||||||||  ||||||||||| ||||||||||||||| ||||||||| ||||||    
T  28677638 agaacttatgaaaacagcttatgacatt-ttcataagttgttttcggcttatttccataag 28677697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 703 - 751
Target Start/End: Original strand, 35379020 - 35379068
Alignment:
Q  703 ttgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||||||||||||||  |||||||||||||||  ||||||||||||    
T  35379020 ttgttcataagttgttttcagcttattttcataagctctccaagatagc 35379068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 694 - 738
Target Start/End: Original strand, 40682390 - 40682434
Alignment:
Q  694 cttatgacattgttcataagttgtttttggcttattttcataagt 738  Q
    |||||||||||||||||||||||||||   |||||||||||||||    
T  40682390 cttatgacattgttcataagttgttttcaacttattttcataagt 40682434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 677 - 737
Target Start/End: Complemental strand, 43570505 - 43570446
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataag 737  Q
    |||||| ||||||||  |||||||||||||||||||| | ||||| |||||||||||||||    
T  43570505 agaacttatgaaaacagcttatgacattgttcataagct-tttttagcttattttcataag 43570446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 684 - 751
Target Start/End: Complemental strand, 40279352 - 40279285
Alignment:
Q  684 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||| ||||||| ||||||||||||  ||||||  ||| |||||||||||| |||||| |||||    
T  40279352 atgaaaacaacttatggcattgttcataaactgttttcagctaattttcataagttctccaatatagc 40279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 684 - 751
Target Start/End: Complemental strand, 40279422 - 40279355
Alignment:
Q  684 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||| ||||||| ||||||||||||  ||||||  ||| |||||||||||| |||||| |||||    
T  40279422 atgaaaacaacttatggcattgttcataaactgttttcagctaattttcataagttctccaatatagc 40279355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 677 - 751
Target Start/End: Complemental strand, 8017525 - 8017452
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| ||||||||  ||||||| || |||||||| |||||||  || ||||||||||||| ||||||||||||    
T  8017525 agaacttatgaaaacagcttatgatat-gttcataatttgttttctgcgtattttcataagttctccaagatagc 8017452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 788 - 870
Target Start/End: Complemental strand, 9174777 - 9174695
Alignment:
Q  788 tgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    |||||| |||||||||||||||| ||  |||||||||| || ||||  | | ||||||||||| |||| | ||||||||||||    
T  9174777 tgctatagaaatagcttatacataagtgtttatcatgataaatgctaatctcataagctgcaaataagttgtttatccaaaca 9174695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 687 - 737
Target Start/End: Complemental strand, 9174897 - 9174847
Alignment:
Q  687 aaaaccacttatgacattgttcataagttgtttttggcttattttcataag 737  Q
    ||||| ||||||||||||||||||||| | ||||  |||||||||||||||    
T  9174897 aaaacaacttatgacattgttcataagctattttcagcttattttcataag 9174847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 694 - 751
Target Start/End: Complemental strand, 1625975 - 1625918
Alignment:
Q  694 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||||| |||||||||| ||||||  ||| |||||| ||||| ||||||||||||    
T  1625975 cttatgacaatgttcataagatgttttcagctgattttcgtaagttctccaagatagc 1625918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 870
Target Start/End: Original strand, 15757812 - 15757865
Alignment:
Q  817 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||| ||| ||||||| ||||||||| || |||||| ||||||||||||    
T  15757812 ttatcatgataagcgcttgtgctataagctgaaaataagctgtttatccaaaca 15757865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 612 - 745
Target Start/End: Complemental strand, 26202185 - 26202052
Alignment:
Q  612 agggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcata 711  Q
    ||||| |||||| |||  ||||||||| ||||| ||||||||||| ||   ||| ||| ||||  |||| | |||| ||| |||||||||| | ||||||    
T  26202185 agggcctgtttggattaacttatttgaacttatctgctgacataagttttgtgagattctttgctagaatttatgagaacaacttatgacaattttcata 26202086  T
Q  712 agttgtttttggcttattttcataagtcctccaa 745  Q
    || | ||||   ||||||||||||||| ||||||    
T  26202085 agcttttttcaacttattttcataagttctccaa 26202052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 803 - 868
Target Start/End: Complemental strand, 26626824 - 26626759
Alignment:
Q  803 ttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaa 868  Q
    |||||||| || ||||||||||| ||| |||| || |||||||||||| |||| | ||||||||||    
T  26626824 ttatacataagtatttatcatgataagagcttatgctataagctgcaaataagttgtttatccaaa 26626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 694 - 751
Target Start/End: Complemental strand, 26626948 - 26626891
Alignment:
Q  694 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||||||||||||||  ||||||  | |||||||||||||| || |||||||||    
T  26626948 cttatgacattgttcataatctgttttcaggttattttcataagttctgcaagatagc 26626891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 694 - 751
Target Start/End: Original strand, 29316771 - 29316827
Alignment:
Q  694 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||||| ||||||||||| ||||  |||||||| ||||||| ||||||||||||    
T  29316771 cttatgacat-gttcataagttcttttcagcttatttccataagttctccaagatagc 29316827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 688 - 737
Target Start/End: Original strand, 41809235 - 41809283
Alignment:
Q  688 aaaccacttatgacattgttcataagttgtttttggcttattttcataag 737  Q
    |||| ||||||||||| ||||||||||||||||| |||||||| ||||||    
T  41809235 aaacaacttatgacat-gttcataagttgtttttagcttatttccataag 41809283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 796 - 870
Target Start/End: Original strand, 44863077 - 44863151
Alignment:
Q  796 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||| |||| | ||||||||||||    
T  44863077 aaatagcttatgcataagcacttatcatgacaagtgcttgtgctataagctgcaaataagttgtttatccaaaca 44863151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 618 - 711
Target Start/End: Complemental strand, 55437227 - 55437134
Alignment:
Q  618 tgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcata 711  Q
    |||||| |||| |||||||||| |||| | ||| ||||| ||   |||||||||||||||||||| |||||||| ||||||||| |||||||||    
T  55437227 tgtttggattggcttatttgagtttatctactgccataagttttgtgaaattgtttgaaagaacttatgaaaacaacttatgacgttgttcata 55437134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 684 - 751
Target Start/End: Original strand, 17822850 - 17822917
Alignment:
Q  684 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||||  ||||||||||| |||||||| | ||||| |||||||||||||||| ||||||||||||    
T  17822850 atgaaaacagcttatgacatttttcataagctttttttagcttattttcataagttctccaagatagc 17822917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 502 - 609
Target Start/End: Original strand, 22420716 - 22420822
Alignment:
Q  502 aacaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattca 601  Q
    |||||||||  |||||||| ||| ||||||||||||||  ||||||  ||||||||||| ||| |||| |||||||| || | |||||||||| || |||    
T  22420716 aacaacaacaaccaagccttatcccactaagtggggtcaactacata-gatcaaacaacgccataatgctctatcatttaccatatctctatccaactca 22420814  T
Q  602 ttaatctc 609  Q
    ||||||||    
T  22420815 ttaatctc 22420822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 620 - 751
Target Start/End: Original strand, 52315118 - 52315249
Alignment:
Q  620 tttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgttt 719  Q
    |||| |||| |||||||||| |||| | ||||| ||| ||   ||| |||||||| ||||||| || ||||| |||||| ||||| ||||||||||| ||    
T  52315118 tttggattgacttatttgagtttatctactgacgtaagttttgtgagattgtttggaagaacttatcaaaacaacttatcacattattcataagttgctt 52315217  T
Q  720 ttggcttattttcataagtcctccaagatagc 751  Q
    |  ||||||||||||||||  ||||| |||||    
T  52315218 tcagcttattttcataagttttccaaaatagc 52315249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 618 - 750
Target Start/End: Original strand, 27043749 - 27043881
Alignment:
Q  618 tgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgt 717  Q
    |||||| |||| ||||||||||||||| | ||||||||| ||   ||||| |||||| ||||| | ||| |||   |||||| ||| || ||||| ||||    
T  27043749 tgtttggattgacttatttgagcttatctactgacataagttttgtgaaactgtttggaagaagttatgcaaatagcttatggcatcgtccataaattgt 27043848  T
Q  718 ttttggcttattttcataagtcctccaagatag 750  Q
    |||| |||||| |||||| || |||||||||||    
T  27043849 ttttagcttatattcatacgttctccaagatag 27043881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 788 - 868
Target Start/End: Complemental strand, 44138522 - 44138442
Alignment:
Q  788 tgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaa 868  Q
    |||||| |||| ||||||||||| ||||  |||||||| ||||||||||  || ||||||||| |||||| ||||||||||    
T  44138522 tgctatagaaacagcttatacataagcaagtatcatgataagtgcttgtactaaaagctgcaaataagctgtttatccaaa 44138442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 787 - 847
Target Start/End: Complemental strand, 23277377 - 23277317
Alignment:
Q  787 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctg 847  Q
    |||||||||| ||||||||||||| |||  ||||||| | ||||||||||| |||||||||    
T  23277377 ttgctattgagatagcttatacataagctcttatcattataagtgcttgtgctataagctg 23277317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 686 - 738
Target Start/End: Complemental strand, 25332858 - 25332806
Alignment:
Q  686 gaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 738  Q
    |||||| ||||||| |||| |||||||||||||||  ||||||||||||||||    
T  25332858 gaaaacaacttatggcattattcataagttgttttcagcttattttcataagt 25332806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 502 - 578
Target Start/End: Complemental strand, 25575107 - 25575032
Alignment:
Q  502 aacaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcat 578  Q
    |||||||||  |||||||| ||| |||||| |||||||||||||| | |||||||  |||||| |||||||||||||    
T  25575107 aacaacaacaaccaagccttatcccactaaatggggtctgctaca-tggatcaaattacaccacaatgttctatcat 25575032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 529 - 608
Target Start/End: Original strand, 29209201 - 29209279
Alignment:
Q  529 taagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatct 608  Q
    ||||||||||| |||||||| ||||||||||| ||| |||| |||||||| || | ||| |||||| || ||||||||||    
T  29209201 taagtggggtcggctacatt-gatcaaacaacgccataatgctctatcatataccatatttctatccaactcattaatct 29209279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 795 - 850
Target Start/End: Original strand, 42641747 - 42641802
Alignment:
Q  795 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaa 850  Q
    |||||||||||||||| | || ||||||||| |||||||| ||| |||||||||||    
T  42641747 gaaatagcttatacataaacacttatcatgataagtgcttatgtaataagctgcaa 42641802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 669 - 751
Target Start/End: Original strand, 13126546 - 13126628
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| ||||||| || |||||  |||||||||||  ||||||| | ||||  |||||||||||||||| ||| ||||||||    
T  13126546 tgtttggaagaacttataaaaacagcttatgacatttatcataagcttttttcagcttattttcataagttctcgaagatagc 13126628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 717 - 751
Target Start/End: Original strand, 16199999 - 16200033
Alignment:
Q  717 tttttggcttattttcataagtcctccaagatagc 751  Q
    ||||| |||||||||||||||||||||||||||||    
T  16199999 tttttagcttattttcataagtcctccaagatagc 16200033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 693 - 751
Target Start/End: Complemental strand, 42685499 - 42685442
Alignment:
Q  693 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||||||| ||| ||||||||||||||||||||||||| | || |||||| |||||    
T  42685499 acttatgacat-gtttataagttgtttttggcttattttcacacgttctccaaaatagc 42685442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 498 - 547
Target Start/End: Complemental strand, 15665388 - 15665339
Alignment:
Q  498 aactaacaacaaccgccaagcctcatcacactaagtggggtctgctacat 547  Q
    |||||||||||||  |||||||| ||| |||||||||||||| |||||||    
T  15665388 aactaacaacaacaaccaagccttatcccactaagtggggtcagctacat 15665339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 677 - 737
Target Start/End: Complemental strand, 28615426 - 28615366
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgttttt-ggcttattttcataag 737  Q
    |||||| ||||||||  || |||||||| |||||||||||||||| ||||||||||||||||    
T  28615426 agaacttatgaaaacagctaatgacatt-ttcataagttgttttttggcttattttcataag 28615366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 827 - 872
Target Start/End: Original strand, 42404138 - 42404183
Alignment:
Q  827 aagtgcttgtgttataagctgcaactaagctatttatccaaacaag 872  Q
    ||||||||||| |||||| ||||| ||||||||| |||||||||||    
T  42404138 aagtgcttgtgctataaggtgcaaataagctattcatccaaacaag 42404183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 502 - 547
Target Start/End: Original strand, 48174092 - 48174137
Alignment:
Q  502 aacaacaaccgccaagcctcatcacactaagtggggtctgctacat 547  Q
    |||||||||  |||||||| ||| ||||||||||||||||||||||    
T  48174092 aacaacaacaaccaagccttatcccactaagtggggtctgctacat 48174137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 781 - 870
Target Start/End: Complemental strand, 46139912 - 46139823
Alignment:
Q  781 tatatgttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||| |||||||| |||||||||||| || | || ||||||||| |||||||||||||||||||||||| |||| | |||| |||||||    
T  46139912 tatattttgctattaaaatagcttatagataatcacttatcatgataagtgcttgtgttataagctgcaaataagttgtttaaccaaaca 46139823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 671 - 720
Target Start/End: Original strand, 7241308 - 7241357
Alignment:
Q  671 tttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttt 720  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  7241308 tttgaaaaaacttatgaaaacgacttatgacattgttcataagttgtttt 7241357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 668 - 751
Target Start/End: Complemental strand, 7244780 - 7244698
Alignment:
Q  668 ttgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||||||| |||||| |||| | ||||||||| | ||||||||||||||  |||||||||||||||  |||||| |||||    
T  7244780 ttgtttgaaagagctgatggaaacaatttatgacat-gctcataagttgttttcagcttattttcataagctctccaatatagc 7244698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 676 - 751
Target Start/End: Complemental strand, 34036010 - 34035935
Alignment:
Q  676 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||   |||||||||  |||| ||| ||||||||    
T  34036010 aagaacttatgaaaataacttatgacattgttcataagttgttttcaacttattttcgcaagttctctaagatagc 34035935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 800 - 870
Target Start/End: Complemental strand, 33128698 - 33128628
Alignment:
Q  800 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||| ||| |||| ||||||||| ||||| ||||| | |||||||||| |||||| ||||||||||||    
T  33128698 agcttatgcataagcacttatcatgataagtgtttgtgctgtaagctgcaaataagctgtttatccaaaca 33128628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 667 - 733
Target Start/End: Complemental strand, 36538009 - 36537944
Alignment:
Q  667 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 733  Q
    ||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||||| |||| ||||||    
T  36538009 attgtttgagagaacttatggaaacaacttatgacat-gttcataagttgtttttagctttttttca 36537944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 669 - 738
Target Start/End: Original strand, 20526899 - 20526968
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 738  Q
    ||||||| |||||||||||||||  ||||||| |||||| ||||| | ||||  ||||||||||||||||    
T  20526899 tgtttgagagaactgatgaaaacagcttatgagattgtttataagatcttttcagcttattttcataagt 20526968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 676 - 736
Target Start/End: Original strand, 15740389 - 15740448
Alignment:
Q  676 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataa 736  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||  |||||||||||||    
T  15740389 aagaacttatgaaaacaacttatgacat-gttcataagctgtttttaacttattttcataa 15740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 667 - 751
Target Start/End: Original strand, 19022553 - 19022637
Alignment:
Q  667 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||||  |||| | |||||||| |||||||||| | |||||||||||| ||   ||||||||||||||| |||||| |||||    
T  19022553 attgtttgggagaatttatgaaaacaacttatgacaattttcataagttgtcttcaacttattttcataagttctccaatatagc 19022637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 795 - 855
Target Start/End: Complemental strand, 19718963 - 19718903
Alignment:
Q  795 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaag 855  Q
    ||||||||||| |||  ||  |||||||||| |||||||||||||||||||||||| ||||    
T  19718963 gaaatagcttacacacaagtgtttatcatgataagtgcttgtgttataagctgcaattaag 19718903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 802 - 871
Target Start/End: Complemental strand, 20428406 - 20428335
Alignment:
Q  802 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctat--ttatccaaacaa 871  Q
    ||||||||| |||  ||||||||| ||||| ||||| |||||||| ||||||||||||  ||||||||||||    
T  20428406 cttatacataagcgcttatcatgagaagtgtttgtgctataagctccaactaagctatacttatccaaacaa 20428335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 795 - 867
Target Start/End: Original strand, 33552935 - 33553007
Alignment:
Q  795 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaa 867  Q
    |||||||||||||||| |||  ||||||||  |||||||||||  ||||||||||| |||| | |||||||||    
T  33552935 gaaatagcttatacataagcgcttatcatggtaagtgcttgtgcaataagctgcaaataagttgtttatccaa 33553007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 751
Target Start/End: Complemental strand, 46140006 - 46139950
Alignment:
Q  695 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||||| ||||| | |||||||| |||| ||||||||||| ||||||||||||    
T  46140006 ttatgacatttttcattacttgtttttagcttgttttcataagttctccaagatagc 46139950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 795 - 875
Target Start/End: Complemental strand, 47795913 - 47795833
Alignment:
Q  795 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 875  Q
    ||||||| |||||||| ||   ||||||||| ||| |||| || |||||||||||| |||||| |||||| ||||||||||    
T  47795913 gaaataggttatacataagtggttatcatgataagcgcttatgctataagctgcaaataagctgtttatctaaacaaggcc 47795833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 502 - 576
Target Start/End: Complemental strand, 1011329 - 1011256
Alignment:
Q  502 aacaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatc 576  Q
    |||||||||  |||||||| ||| |||||||||||||| |||||| | |||||||  |||||| |||||||||||    
T  1011329 aacaacaacaaccaagccttatcccactaagtggggtcggctaca-tagatcaaattacaccataatgttctatc 1011256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 800 - 870
Target Start/End: Complemental strand, 9210569 - 9210499
Alignment:
Q  800 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||||| |||  ||||||||| || || ||| | |||||||||||| |||||| ||||||||||||    
T  9210569 agcttatacataagcgattatcatgataaatgtttgcgctataagctgcaaataagctgtttatccaaaca 9210499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 669 - 751
Target Start/End: Complemental strand, 20526546 - 20526464
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||| |||||| ||||||||   |||| ||||| ||| |||| ||||||| |||||||||||| ||| |||||| |||||    
T  20526546 tgtttgagagaacttatgaaaacagtttatcacatttttcgtaagctgtttttagcttattttcattagttctccaaaatagc 20526464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 609
Target Start/End: Complemental strand, 22174254 - 22174177
Alignment:
Q  531 agtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatctc 609  Q
    ||||||||| |||||||  ||||||||||| ||| ||||||||||||  || | ||| |||||| ||||||||||||||    
T  22174254 agtggggtcggctacatg-gatcaaacaacgccataatgttctatcacataccatatttctatctaattcattaatctc 22174177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 677 - 751
Target Start/End: Complemental strand, 33678872 - 33678798
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| |||||||| |||||| ||||||||||| || ||||||   |||||||||| ||||  |||||||||||    
T  33678872 agaacttatgaaaacaacttataacattgttcatgagatgttttcaacttattttcacaagttttccaagatagc 33678798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 502 - 608
Target Start/End: Original strand, 40008430 - 40008535
Alignment:
Q  502 aacaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattca 601  Q
    |||||||||  ||||| || ||| || |||||| |||| |||||||  |||||||||||  || ||||||||||||| |||| | |||||||| || |||    
T  40008430 aacaacaacaaccaagtcttatctcattaagtgaggtcagctacatg-gatcaaacaacgacataatgttctatcatatatcatgtctctatccaactca 40008528  T
Q  602 ttaatct 608  Q
    |||||||    
T  40008529 ttaatct 40008535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 870
Target Start/End: Original strand, 38138625 - 38138678
Alignment:
Q  817 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||||||||| ||||| ||||||  |||| |||||| ||||||||||||    
T  38138625 ttatcatgacaagtgattgtgctataagacgcaaataagctgtttatccaaaca 38138678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 704 - 745
Target Start/End: Original strand, 47559606 - 47559647
Alignment:
Q  704 tgttcataagttgtttttggcttattttcataagtcctccaa 745  Q
    ||||||||||||||||| |||| |||||||||||| ||||||    
T  47559606 tgttcataagttgttttcggctcattttcataagttctccaa 47559647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 800 - 871
Target Start/End: Original strand, 24030531 - 24030602
Alignment:
Q  800 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaa 871  Q
    |||||||||| | ||| ||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||    
T  24030531 agcttatacacgcgcacttatcatgataagtgcttgtgctataagctgcaaataagctgtttatccaaacaa 24030602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 684 - 751
Target Start/End: Complemental strand, 39105549 - 39105482
Alignment:
Q  684 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||||  |||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||    
T  39105549 atgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaagatagc 39105482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 677 - 751
Target Start/End: Original strand, 1464998 - 1465072
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| ||||||||  |||||| ||||| ||||||||||||||  ||||||||||| |||||||||||||||||    
T  1464998 agaacttatgaaaacagcttatggcattgctcataagttgttttcagcttattttcacaagtcctccaagatagc 1465072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 613 - 750
Target Start/End: Complemental strand, 10640109 - 10639972
Alignment:
Q  613 gggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataa 712  Q
    |||| |||||| |||  |||||||||| |||| | ||||||||| ||   ||| ||||||||  |||||| ||||||||  ||||||||||| |||||||    
T  10640109 gggcctgtttggattagcttatttgagtttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacagcttatgacatttttcataa 10640010  T
Q  713 gttgtttttggcttattttcataagtcctccaagatag 750  Q
    | | ||| | |||||||||||||||| |||||| ||||    
T  10640009 gctttttctagcttattttcataagttctccaaaatag 10639972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 694 - 747
Target Start/End: Original strand, 42099867 - 42099920
Alignment:
Q  694 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaaga 747  Q
    |||||||||||||||||||| |||||||||||||||||||||||| || |||||    
T  42099867 cttatgacattgttcataagctgtttttggcttattttcataagttcttcaaga 42099920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 684 - 751
Target Start/End: Original strand, 12459987 - 12460053
Alignment:
Q  684 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||  || |||||||||    
T  12459987 atgaaaacaacttatgacat-gttcatatgttgtttttggcttattttcataagctctgcaagatagc 12460053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 796 - 870
Target Start/End: Complemental strand, 28776930 - 28776856
Alignment:
Q  796 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||||||||| |||| ||||||||| ||||||||  | |||||||||||| |||| | ||||||||||||    
T  28776930 aaatagcttatacataagcacttatcatgataagtgcttaggctataagctgcaaataagttgtttatccaaaca 28776856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 695 - 747
Target Start/End: Complemental strand, 40848819 - 40848767
Alignment:
Q  695 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaaga 747  Q
    |||| ||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  40848819 ttatcacattgttcataagttgttttcgccttattttcataagttctccaaga 40848767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 816 - 875
Target Start/End: Complemental strand, 3520356 - 3520297
Alignment:
Q  816 tttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 875  Q
    |||||||||||||||||||||| ||||||||| || |||| | |||||||||||| ||||    
T  3520356 tttatcatgacaagtgcttgtgctataagctgaaaataagttgtttatccaaacatggcc 3520297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 614 - 751
Target Start/End: Complemental strand, 11700317 - 11700181
Alignment:
Q  614 ggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataag 713  Q
    |||||||||| |||  |||||||||||||||   ||| ||||| ||   ||| | ||||| | |||||| ||| |||| ||||||||||||||||||||     
T  11700317 ggcatgtttggatttgcttatttgagcttatccactggcataagttttgtgagactgtttcacagaacttatggaaacaacttatgacattgttcataaa 11700218  T
Q  714 ttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||    ||||||||||||||| ||||| ||||||    
T  11700217 ttgtttcat-cttattttcataagttctccacgatagc 11700181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 817 - 870
Target Start/End: Complemental strand, 32372548 - 32372495
Alignment:
Q  817 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||| ||||||||||| |||||||||||| |||| | ||||||||||||    
T  32372548 ttatcatgataagtgcttgtgctataagctgcaaataagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 795 - 875
Target Start/End: Original strand, 9202862 - 9202942
Alignment:
Q  795 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 875  Q
    ||||||||||||| || |||| ||||||||| ||   |||||| |||||||||||| |||| | |||||||||||| ||||    
T  9202862 gaaatagcttatatataagcacttatcatgataaacacttgtgctataagctgcaaataagatgtttatccaaacagggcc 9202942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 704 - 751
Target Start/End: Original strand, 4014429 - 4014476
Alignment:
Q  704 tgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||||| ||||||  |||||||||||||||| ||||||||||||    
T  4014429 tgttcataagctgttttcagcttattttcataagttctccaagatagc 4014476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 694 - 749
Target Start/End: Original strand, 9202743 - 9202798
Alignment:
Q  694 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 749  Q
    |||||||||||||||||||| |||||   |||||||||||||||| || |||||||    
T  9202743 cttatgacattgttcataagctgtttccagcttattttcataagttcttcaagata 9202798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 608 - 646
Target Start/End: Complemental strand, 43301039 - 43301001
Alignment:
Q  608 tccaagggcatgtttgtattgtcttatttgagcttatat 646  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  43301039 tccaagggcatgtttggattggcttatttgagcttatat 43301001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 751
Target Start/End: Original strand, 7319011 - 7319060
Alignment:
Q  702 attgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||| ||||||||||| |  |||||||||||||||| ||||||||||||    
T  7319011 attgtccataagttgttctcagcttattttcataagttctccaagatagc 7319060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 698 - 751
Target Start/End: Complemental strand, 7985040 - 7984987
Alignment:
Q  698 tgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||| ||||||||||| ||||||  |||||||||||||| | ||||||||||||    
T  7985040 tgacgttgttcataagctgttttcagcttattttcataaattctccaagatagc 7984987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 870
Target Start/End: Original strand, 13697905 - 13697958
Alignment:
Q  817 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||| || ||||| ||||||||||||||| |||| | ||||||||||||    
T  13697905 ttatcatgataaatgcttatgttataagctgcaaataagttgtttatccaaaca 13697958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 800 - 873
Target Start/End: Original strand, 26005367 - 26005440
Alignment:
Q  800 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaagg 873  Q
    ||||||||||| |||| ||||||| | ||||| ||||| |||||||| | | |||| | |||||||||||||||    
T  26005367 agcttatacataagcaattatcataataagtgtttgtgctataagcttctaataagttgtttatccaaacaagg 26005440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 870
Target Start/End: Complemental strand, 40426686 - 40426633
Alignment:
Q  817 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||| ||||||||||| |||||||||||| | || | ||||||||||||    
T  40426686 ttatcatgataagtgcttgtgctataagctgcaaatgagttgtttatccaaaca 40426633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 787 - 875
Target Start/End: Complemental strand, 42100286 - 42100195
Alignment:
Q  787 ttgctattgaaatagcttataca---tgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 875  Q
    ||||||| ||||||||| |||||   | ||| ||||| || | ||| ||||||| |||||||||||| |||| |||||||||||||| ||||    
T  42100286 ttgctatcgaaatagctgatacaacataagcgtttattattataagcgcttgtgatataagctgcaaataagttatttatccaaacagggcc 42100195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 696 - 751
Target Start/End: Original strand, 38503462 - 38503517
Alignment:
Q  696 tatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  38503462 tatgacattgttcataagttgttttcagcttattttcataagttctccaagatagc 38503517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 669 - 743
Target Start/End: Original strand, 3887602 - 3887676
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctcc 743  Q
    |||||| ||||||| ||||||||  |||||||||||||||||||| |||||||  ||||||||||||||| ||||    
T  3887602 tgtttggaagaacttatgaaaacatcttatgacattgttcataagctgtttttaacttattttcataagttctcc 3887676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 693 - 751
Target Start/End: Complemental strand, 15784405 - 15784347
Alignment:
Q  693 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||    
T  15784405 acttatgacattgttcacaagttgtttttagcttattttcacaagttctccaagatagc 15784347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 670 - 751
Target Start/End: Original strand, 7136970 - 7137050
Alignment:
Q  670 gtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||||||||| ||||||| | ||||||||||  |||||||||| ||||  |||||||||||||||| ||||||||||||    
T  7136970 gtttgaaagaacttatgaaaatcgcttatgacata-ttcataagttattttcagcttattttcataagttctccaagatagc 7137050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 667 - 738
Target Start/End: Original strand, 47498807 - 47498878
Alignment:
Q  667 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 738  Q
    ||||||||  |||||| |||||||   ||||||| |||||||||||||||||||| ||||||||||||||||    
T  47498807 attgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttattttcataagt 47498878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 671 - 749
Target Start/End: Original strand, 27145708 - 27145785
Alignment:
Q  671 tttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 749  Q
    |||| ||||||| | |||||| ||||||||||||||||||||||| ||||  |||||||||||||||| || |||||||    
T  27145708 tttggaagaacttaagaaaacgacttatgacattgttcataagtt-ttttcagcttattttcataagttcttcaagata 27145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 796 - 870
Target Start/End: Complemental strand, 45975645 - 45975571
Alignment:
Q  796 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    |||||| |||||||| ||   ||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||    
T  45975645 aaatagtttatacataagggcttatcatgataagtgtttgtgttataagctacaaataagctatttatccaaaca 45975571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 795 - 870
Target Start/End: Original strand, 5894277 - 5894352
Alignment:
Q  795 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    |||||||||||||||| |||  ||||||||| |||  |||||| |||||||| ||| |||||| ||||||||||||    
T  5894277 gaaatagcttatacataagcgcttatcatgataagcacttgtgctataagcttcaaataagctgtttatccaaaca 5894352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 693 - 751
Target Start/End: Complemental strand, 7069377 - 7069319
Alignment:
Q  693 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||||||||||||||| ||||||||   | |||||||||||| ||||||||||||    
T  7069377 acttatgacattgttcataatttgtttttaattcattttcataagttctccaagatagc 7069319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 669 - 751
Target Start/End: Original strand, 51695465 - 51695547
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| ||||||| ||  |||| |||||| |||||||||||||| | ||||  |||||||||||||| | ||||||||||||    
T  51695465 tgtttggaagaacttatataaacaacttatcacattgttcataagctattttcagcttattttcataaattctccaagatagc 51695547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 668 - 749
Target Start/End: Complemental strand, 37473504 - 37473423
Alignment:
Q  668 ttgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 749  Q
    |||||||  ||||||  ||||||| |||||||||||| |||||||| | |||   |||||||||||||||| ||||||||||    
T  37473504 ttgtttgggagaacttttgaaaacaacttatgacatttttcataagctttttccagcttattttcataagttctccaagata 37473423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 669 - 733
Target Start/End: Complemental strand, 4482029 - 4481966
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 733  Q
    ||||||| |||||| |||||||| |||||| |||| ||||||||| ||||||| |||||||||||    
T  4482029 tgtttgagagaacttatgaaaacaacttattacat-gttcataagctgtttttagcttattttca 4481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 802 - 870
Target Start/End: Complemental strand, 5720920 - 5720852
Alignment:
Q  802 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||| |||  ||||||||| | |||||||||||||||||  ||| |||| ||||||||||||||    
T  5720920 cttatacataagcgcttatcatgataggtgcttgtgttataagccacaaataagatatttatccaaaca 5720852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 513 - 609
Target Start/End: Original strand, 30396739 - 30396834
Alignment:
Q  513 ccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatctc 609  Q
    |||||||| ||| |||||||||||||  ||||||   ||||||||  ||||| ||||||||||||| |||| |||| ||||| || |||||||||||    
T  30396739 ccaagccttatcccactaagtggggttggctacacg-gatcaaacgccaccataatgttctatcatatatcgtatccctatccaactcattaatctc 30396834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 802 - 870
Target Start/End: Original strand, 41195325 - 41195393
Alignment:
Q  802 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||| |||  |||||| || ||| ||||||| |||||||||||| |||| ||||||||||||||    
T  41195325 cttatacataagcgattatcaggataagcgcttgtgctataagctgcaaataagttatttatccaaaca 41195393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 704 - 755
Target Start/End: Complemental strand, 15361105 - 15361054
Alignment:
Q  704 tgttcataagttgtttttggcttattttcataagtcctccaagatagccaat 755  Q
    |||||||||||||||||  |||||||||||||||  ||||| ||||||||||    
T  15361105 tgttcataagttgttttcagcttattttcataagctctccaggatagccaat 15361054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 15577654 - 15577595
Alignment:
Q  550 gatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatctc 609  Q
    ||||||||||||| | ||||||||||||  |||| |||||||||| || |||||||||||    
T  15577654 gatcaaacaacacaataatgttctatcaaatatcatatctctatccaactcattaatctc 15577595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 694 - 749
Target Start/End: Original strand, 38116073 - 38116128
Alignment:
Q  694 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 749  Q
    ||||||||||||||| ||||||||||   ||||| |||||||||| ||||||||||    
T  38116073 cttatgacattgttcctaagttgtttccagcttactttcataagttctccaagata 38116128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 787 - 850
Target Start/End: Original strand, 38116291 - 38116354
Alignment:
Q  787 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaa 850  Q
    |||||||||||||||||||||||| |||  ||||||||| ||| || |||  ||||||||||||    
T  38116291 ttgctattgaaatagcttatacataagcgcttatcatgataagcgcatgtactataagctgcaa 38116354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 827 - 870
Target Start/End: Complemental strand, 46423194 - 46423151
Alignment:
Q  827 aagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  46423194 aagtgcttgtgttataagctgcaaataagttgtttatccaaaca 46423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 620 - 750
Target Start/End: Complemental strand, 1432664 - 1432534
Alignment:
Q  620 tttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgttt 719  Q
    |||| |||| |||||||||||||||   | ||||||||||   ||| | |||||| ||||||| |||||||   | ||||||||||||||||||   |      
T  1432664 tttggattggcttatttgagcttatccaccgacataaattttgtgagactgtttggaagaacttatgaaaatagcgtatgacattgttcataagacatac 1432565  T
Q  720 ttggcttattttcataagtcctccaagatag 750  Q
    || ||||| |||||||||| |||||||||||    
T  1432564 ttagcttactttcataagttctccaagatag 1432534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 677 - 751
Target Start/End: Original strand, 3233993 - 3234067
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| |||||||| |||||| ||| | |||||||||| ||||   ||||||||||||||| |||||| |||||    
T  3233993 agaacttatgaaaacaacttataacagttttcataagtttttttctacttattttcataagttctccaatatagc 3234067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 694 - 748
Target Start/End: Original strand, 5886990 - 5887043
Alignment:
Q  694 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagat 748  Q
    |||||||||| ||||||||||||||||  |||||||||| ||||| |||||||||    
T  5886990 cttatgacat-gttcataagttgttttcagcttattttcgtaagttctccaagat 5887043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 625 - 751
Target Start/End: Complemental strand, 6102297 - 6102172
Alignment:
Q  625 attgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggc 724  Q
    |||| |||||||||| |||| | | | ||||||||   ||| ||||||||  |||||| ||||||||  ||||||| ||||||||||| |||||||  ||    
T  6102297 attgacttatttgagtttatctaccggcataaattttgtgagattgtttgggagaact-atgaaaacagcttatgatattgttcataaattgttttcagc 6102199  T
Q  725 ttattttcataagtcctccaagatagc 751  Q
    |||||| ||||| | |||| |||||||    
T  6102198 ttatttccataaattctcccagatagc 6102172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 503 - 577
Target Start/End: Original strand, 21769711 - 21769784
Alignment:
Q  503 acaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatca 577  Q
    ||||||||  |||||||| |||||||||||||||||| |||||| | |||||||  || ||| ||||||||||||    
T  21769711 acaacaacaaccaagccttatcacactaagtggggtcggctaca-tggatcaaattacgccataatgttctatca 21769784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 795 - 869
Target Start/End: Original strand, 27146362 - 27146436
Alignment:
Q  795 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaac 869  Q
    |||||| ||||||||| | |  ||||||||| | || ||| || |||||||||||| ||||||||||||||||||    
T  27146362 gaaataccttatacataaacgcttatcatgatatgtacttatgctataagctgcaaataagctatttatccaaac 27146436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 693 - 751
Target Start/End: Original strand, 46252677 - 46252734
Alignment:
Q  693 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||||||| ||||||||||||||||  | |||||||||||||  ||||||||||||    
T  46252677 acttatgacat-gttcataagttgttttcaggttattttcataagctctccaagatagc 46252734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 796 - 870
Target Start/End: Original strand, 47498958 - 47499032
Alignment:
Q  796 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||||||||  |||  ||||||||| |||  |||||| |||||||||||| |||| | ||||||||||||    
T  47498958 aaatagcttatacacaagcgcttatcatgataagcacttgtgctataagctgcaaataagttgtttatccaaaca 47499032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 694 - 751
Target Start/End: Original strand, 27820332 - 27820389
Alignment:
Q  694 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||| ||||||||||||||| | ||||  |||||||||||||| | ||||||||||||    
T  27820332 cttacgacattgttcataagctattttcagcttattttcataaattctccaagatagc 27820389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 513 - 578
Target Start/End: Complemental strand, 29129056 - 29128991
Alignment:
Q  513 ccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcat 578  Q
    |||||||| ||| |||||||||||||| |||||||  ||||| |  |||||| |||||||||||||    
T  29129056 ccaagccttatctcactaagtggggtcggctacatgggatcatattacaccataatgttctatcat 29128991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 706 - 751
Target Start/End: Complemental strand, 34290299 - 34290254
Alignment:
Q  706 ttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||||||||||||  |||||||||||||||| || |||||||||    
T  34290299 ttcataagttgttttcagcttattttcataagttcttcaagatagc 34290254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 797 - 850
Target Start/End: Complemental strand, 37841952 - 37841899
Alignment:
Q  797 aatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaa 850  Q
    ||||||||||||||||| | ||||||||| |||||||| || ||| ||||||||    
T  37841952 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaa 37841899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 870
Target Start/End: Complemental strand, 43990172 - 43990119
Alignment:
Q  817 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||||||  ||||||| ||||| |||||| || ||||||||||||||||    
T  43990172 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 43990119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 677 - 735
Target Start/End: Original strand, 32840964 - 32841022
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcata 735  Q
    |||||| |||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  32840964 agaacttatgaaaacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 667 - 738
Target Start/End: Complemental strand, 33808405 - 33808334
Alignment:
Q  667 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 738  Q
    ||||||||  |||||| |||||||   ||||||| |||||||||||||||||||| ||||||||||||||||    
T  33808405 attgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttattttcataagt 33808334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 670 - 750
Target Start/End: Original strand, 9956785 - 9956865
Alignment:
Q  670 gtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 750  Q
    |||||| |||||| |||||||    ||||| |||||||||||||| |||||  |||||||||||||||| |||||||||||    
T  9956785 gtttgagagaacttatgaaaatagtttatggcattgttcataagtagttttcagcttattttcataagttctccaagatag 9956865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 694 - 749
Target Start/End: Original strand, 3536940 - 3536995
Alignment:
Q  694 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 749  Q
    ||||||||||||||||||| |||||||  |||||||| ||||||| ||||||||||    
T  3536940 cttatgacattgttcataaattgttttcagcttatttccataagttctccaagata 3536995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 611 - 749
Target Start/End: Original strand, 1057989 - 1058126
Alignment:
Q  611 aagggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcat 710  Q
    ||||||| ||||| | || ||||||||||||||| | || |||||| ||   ||| | ||||||  ||||||  |||||||  ||||||||||| |||||    
T  1057989 aagggcaagtttgaactggcttatttgagcttatctacttacataagttttgtgagactgtttgggagaacttttgaaaactgcttatgacatttttcat 1058088  T
Q  711 aagttgtttttggcttattttcataagtcctccaagata 749  Q
     |||| ||||  |||||||||||||||| ||||||||||    
T  1058089 tagtt-ttttccgcttattttcataagttctccaagata 1058126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 700 - 750
Target Start/End: Complemental strand, 1113127 - 1113077
Alignment:
Q  700 acattgttcataagttgtttttggcttattttcataagtcctccaagatag 750  Q
    |||||||||||||| ||||||| ||| |||||||||||| |||||||||||    
T  1113127 acattgttcataagctgtttttagctaattttcataagttctccaagatag 1113077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 677 - 751
Target Start/End: Complemental strand, 43504842 - 43504769
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||||||||||||||| ||||| ||| ||||| ||||| ||||||  |||||||| ||||||| ||||||||||||    
T  43504842 agaactgatgaaaacaacttacgac-ttgtttataagctgttttcagcttatttccataagttctccaagatagc 43504769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 667 - 720
Target Start/End: Original strand, 779030 - 779082
Alignment:
Q  667 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttt 720  Q
    |||||||||||||||| | |||||| |||||||||| |||||||||||||||||    
T  779030 attgtttgaaagaacttacgaaaacaacttatgaca-tgttcataagttgtttt 779082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 669 - 750
Target Start/End: Complemental strand, 10120856 - 10120775
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 750  Q
    ||||||| |||||| ||||||||  |||||||||||  ||||| | ||||||  |||||||||||||||| |||||| ||||    
T  10120856 tgtttgagagaacttatgaaaacagcttatgacatttatcatatgctgttttcagcttattttcataagttctccaatatag 10120775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 611 - 751
Target Start/End: Original strand, 30251366 - 30251506
Alignment:
Q  611 aagggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcat 710  Q
    |||||| |||||| |||| ||||||||||||||| | ||||||||| ||   ||| | ||||||  |||||| | ||||||  |||||  |||| |||||    
T  30251366 aagggcctgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaaacagcttattgcatttttcat 30251465  T
Q  711 aagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    ||| | |||   ||||||||||||||||  |||||||||||    
T  30251466 aagctttttacagcttattttcataagtggtccaagatagc 30251506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 611 - 738
Target Start/End: Original strand, 10758169 - 10758296
Alignment:
Q  611 aagggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcat 710  Q
    ||||||||||||| |||| ||||||||| ||||| |||| |||||| ||   ||| | ||||||| |||| | ||||||||  ||||||||| | ||||     
T  10758169 aagggcatgtttgaattgacttatttgaacttatctgctaacataagttttgtgagactgtttgatagaatttatgaaaacagcttatgacaattttcaa 10758268  T
Q  711 aagttgtttttggcttattttcataagt 738  Q
    ||| | ||||  |||| |||||||||||    
T  10758269 aagcttttttcagcttgttttcataagt 10758296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 503 - 578
Target Start/End: Complemental strand, 45419517 - 45419443
Alignment:
Q  503 acaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcat 578  Q
    ||||||||  |||||||| ||| |||||||||||||| |||||| | |||||||  |||||| |||||||||||||    
T  45419517 acaacaacaaccaagccttatcccactaagtggggtcggctaca-tggatcaaattacaccataatgttctatcat 45419443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 817 - 875
Target Start/End: Complemental strand, 40981054 - 40980996
Alignment:
Q  817 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 875  Q
    |||||| || ||| ||||||| |||||||||||| |||||| |||||||||||| ||||    
T  40981054 ttatcaagataagcgcttgtgctataagctgcaaataagctgtttatccaaacagggcc 40980996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 799 - 869
Target Start/End: Original strand, 41475178 - 41475248
Alignment:
Q  799 tagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaac 869  Q
    |||||||||||| ||   ||||||||||||||| |||| ||||||| ||||| |||| | |||||||||||    
T  41475178 tagcttatacataagtgcttatcatgacaagtgtttgtcttataagttgcaaataagttgtttatccaaac 41475248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 514 - 607
Target Start/End: Complemental strand, 23492305 - 23492213
Alignment:
Q  514 caagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatc 607  Q
    ||||||| ||| |||||||||||||| |||||| | ||| |||  |||||| | ||||||||||| |||| ||| |||||| || |||||||||    
T  23492305 caagccttatctcactaagtggggtcggctaca-tggattaaatgacaccatagtgttctatcatatatcatatttctatccaactcattaatc 23492213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 800 - 870
Target Start/End: Complemental strand, 6538458 - 6538388
Alignment:
Q  800 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    ||||||||||| |||  ||||||| | ||||||||||| |||||||||||| |||||||||||||||||||    
T  6538458 agcttatacataagcgcttatcattataagtgcttgtgctataagctgcaaataagctatttatccaaaca 6538388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 671 - 748
Target Start/End: Complemental strand, 2455357 - 2455280
Alignment:
Q  671 tttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagat 748  Q
    ||||| |||||| |||||||| |||||| |||||||| ||||||||||||  ||||||||||| || | |||||||||    
T  2455357 tttgagagaacttatgaaaacaacttattacattgtttataagttgttttcagcttattttcacaacttctccaagat 2455280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 669 - 738
Target Start/End: Complemental strand, 2735169 - 2735100
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 738  Q
    ||||||| | |||| ||||||||  ||||||||||| |||||||| |||||| |||||||||||||||||    
T  2735169 tgtttgagataacttatgaaaacggcttatgacatttttcataagctgttttcggcttattttcataagt 2735100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 677 - 750
Target Start/End: Original strand, 9912169 - 9912242
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 750  Q
    |||||| |||||| |  |||||||||||||||||||| ||||||  |||||||||||||||| |||||| ||||    
T  9912169 agaacttatgaaaccagcttatgacattgttcataagctgttttgagcttattttcataagttctccaatatag 9912242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 550 - 608
Target Start/End: Complemental strand, 3964025 - 3963967
Alignment:
Q  550 gatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatct 608  Q
    ||||||||||| ||  ||||||||||||| |||| ||||||||||||| ||||||||||    
T  3964025 gatcaaacaacgccgtaatgttctatcatatatcgtatctctatcaaactcattaatct 3963967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 677 - 735
Target Start/End: Original strand, 33832252 - 33832309
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcata 735  Q
    |||||| |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||    
T  33832252 agaacttatgaaaacaacttatgacat-gtttataagttgtttttagcttattttcata 33832309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 667 - 745
Target Start/End: Original strand, 34910377 - 34910455
Alignment:
Q  667 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaa 745  Q
    |||||||| |||||   ||||||||  ||||||||||||||||| |||||||||  ||||| |||||||||| ||||||    
T  34910377 attgtttggaagaaactatgaaaacagcttatgacattgttcatgagttgttttccgcttactttcataagttctccaa 34910455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 795 - 875
Target Start/End: Complemental strand, 264327 - 264247
Alignment:
Q  795 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 875  Q
    ||||||||||||| || |||| ||||||||| |||  |||||| |||||||||||| | |||| || ||||||||| ||||    
T  264327 gaaatagcttatatataagcacttatcatgataagcacttgtgctataagctgcaaattagctgttaatccaaacagggcc 264247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 676 - 736
Target Start/End: Complemental strand, 1575987 - 1575928
Alignment:
Q  676 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataa 736  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||  |||||||||||||    
T  1575987 aagaacttatgaaaacaacttatgacat-gttcataagctgtttttaacttattttcataa 1575928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 676 - 752
Target Start/End: Complemental strand, 31624182 - 31624107
Alignment:
Q  676 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagcc 752  Q
    ||||||| ||||||||  |||||||||| ||||||||| ||||||   ||||||||||||| | |||||||||||||    
T  31624182 aagaacttatgaaaacagcttatgacat-gttcataagctgttttcaacttattttcataatttctccaagatagcc 31624107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 787 - 875
Target Start/End: Complemental strand, 35069516 - 35069428
Alignment:
Q  787 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 875  Q
    |||||||  ||||||||||| ||| |||| ||||||||| ||  ||||||| |||||||||||| |||| | |||||| ||||| ||||    
T  35069516 ttgctatataaatagcttatgcataagcacttatcatgataaacgcttgtgctataagctgcaaataagttgtttatcaaaacagggcc 35069428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 695 - 738
Target Start/End: Original strand, 34882417 - 34882460
Alignment:
Q  695 ttatgacattgttcataagttgtttttggcttattttcataagt 738  Q
    ||||||||||||||||||||||||||   |||||||||||||||    
T  34882417 ttatgacattgttcataagttgttttccacttattttcataagt 34882460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 677 - 751
Target Start/End: Complemental strand, 31813253 - 31813179
Alignment:
Q  677 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 751  Q
    |||||| |||||||   ||||||| ||||||||||||  |||||  ||||||||||||| || ||||||||||||    
T  31813253 agaacttatgaaaattgcttatgagattgttcataagccgttttcagcttattttcatatgttctccaagatagc 31813179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 656
Target Start/End: Original strand, 35069524 - 35069569
Alignment:
Q  611 aagggcatgtttgtattgtcttatttgagcttatatgctgacataa 656  Q
    |||||| ||||||||||| ||||||||||||||| | |||||||||    
T  35069524 aagggcctgtttgtattggcttatttgagcttatctactgacataa 35069569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 669 - 733
Target Start/End: Original strand, 9608 - 9671
Alignment:
Q  669 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 733  Q
    ||||||| |||||| |||||||| |||||| |||| ||||||||| ||||||| |||||||||||    
T  9608 tgtttgagagaacttatgaaaacaacttattacat-gttcataagctgtttttagcttattttca 9671  T

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Target: scaffold0699 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 820 - 870
Target Start/End: Complemental strand, 6835 - 6785
Alignment:
Q  820 tcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    |||||| ||||||||||| | |||||||||| ||||| |||||||||||||    
T  6835 tcatgataagtgcttgtgctctaagctgcaaataagcaatttatccaaaca 6785  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 812 - 870
Target Start/End: Complemental strand, 158036 - 157978
Alignment:
Q  812 agcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 870  Q
    |||| ||||||| | ||||| ||||| |||||||||||| |||||| ||||||||||||    
T  158036 agcaattatcatcataagtgtttgtgctataagctgcaaataagctgtttatccaaaca 157978  T

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