View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5957_low_2 (Length: 432)
Name: NF5957_low_2
Description: NF5957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5957_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 12103019 - 12103420
Alignment:
| Q |
18 |
aatttgggagtcagattctgttaagaaagcaatttacttcgtcgattttgctgatggaaccgagaaaattgcgaccaatgtatccattgatgttaacgga |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12103019 |
aatttgggagtcggattctgttaagaaagcaatttacctcgtcgattttgctgatggaactgagaaaattgcgaccaatgtatccattgatgttaacgga |
12103118 |
T |
|
| Q |
118 |
gacaaaatgccagcagtgaaagtaatgcagacagacagctgtagtaggtccgaatggatttctaacatactggttgaacttagatggttttcctgctgtt |
217 |
Q |
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||| |||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
12103119 |
gacgaaatgccaccagtgaaagtaatgcaga----cagctgtagtaggtacgagtggatttctaaaataccggttgaacttagatggttttcctgctgtt |
12103214 |
T |
|
| Q |
218 |
ggatgtgcattcagctatcttgcagagatagaagattttctgcaaaatgaatctcgaaaattcaggctagtacttccgggccagcctagtattagtaaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12103215 |
ggatgtgcattcagctatcttgcagagatagaagattttctgcaaaatgaatctcgaaaattcaggctagtacttccgggccagcctagtgttagtaaag |
12103314 |
T |
|
| Q |
318 |
ccattgtaaatatcgaagagattgctcgaggaaaatatcgtatgtatcaaccaggatttatgtatgcatccctaccgtttttgtatgagcctagtattag |
417 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12103315 |
ccattgtaaatatcaaagagattgctcgaggaaaatatcgtatgtatcaaccaggatttatgtatgcatccctaccgtttttgtatgagcctagtattag |
12103414 |
T |
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| Q |
418 |
tattat |
423 |
Q |
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|||||| |
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| T |
12103415 |
tattat |
12103420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 28788528 - 28788168
Alignment:
| Q |
18 |
aatttgggagtcagattctgttaagaaagcaatttacttcgtcgattttgctgatggaaccgagaaaattgcgaccaatgtatccattgatgtta----- |
112 |
Q |
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||||||||||||||||||||| |||||||||| |||| | || ||| |||||||||||||| |||||||| |||| ||||| ||||||||||||| |
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| T |
28788528 |
aatttgggagtcagattctgtcaagaaagcaaattaccttgttgatgttgctgatggaaccaagaaaatttcgactaatgtgtccattgatgttagaggt |
28788429 |
T |
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| Q |
113 |
-acggagacaaaatgccagcagtgaaagtaatgcagacagacagctgtagtaggtccgaatggatttctaacatactggttgaacttagatggttttcct |
211 |
Q |
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| T |
28788428 |
aatggagatgaaatgccaccagtgaaagtaatgcagacag----ctgtagtaggtacaaatggatctctaacttaccggttgaacttggatggttttcca |
28788333 |
T |
|
| Q |
212 |
gctgttggatgtgcattcagctatcttgcagagatagaagattttctgcaaaatgaatctcgaaaattcaggctagtacttccgggccagcctagtatta |
311 |
Q |
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|| ||||| |||| |||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| || ||| || ||||| |
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| T |
28788332 |
gccaccggatgggcatacagctatcttgcagagatagaagaatttccgcgaaatgaatctcgaaaattcaggctagtacttccaggacaggctgatatta |
28788233 |
T |
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| Q |
312 |
gtaaagccattgtaaatatcgaagagattgctcgaggaaaatatcgtatgtatcaaccaggattt |
376 |
Q |
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| T |
28788232 |
gtaaagccgtggtaaatatcgaagagaatgctctacgcaaatatcgtctttatgaaccaggattt |
28788168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 40531273 - 40531463
Alignment:
| Q |
18 |
aatttgggagtcagattctgttaagaaagcaatttacttcgtcgattttgctgatggaaccgagaaaattgcgaccaatgtatccattgatgttaacgga |
117 |
Q |
| |
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|||||||||||| |||||||| |||||||||| ||| | || ||| |||||| |||||| |||||| || | ||||||||| | ||| ||||| || |
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| T |
40531273 |
aatttgggagtctgattctgtgaagaaagcaaattatcttgttgatgttgctgttggaactgagaaagtttctaccaatgtaccaattttagttaataga |
40531372 |
T |
|
| Q |
118 |
gacaaaatgccagcagtgaaagtaatgcagacagacagctgtagtaggtccgaatggatttctaacatactggttgaacttagatggttttcctg |
212 |
Q |
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| T |
40531373 |
gacgatgtaccaccagtgaaagtgatg----cagacagccgtagtcggtacaaatggatctctaacataccggttgaatttggatgggtttcctg |
40531463 |
T |
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