View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5957_low_5 (Length: 226)

Name: NF5957_low_5
Description: NF5957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5957_low_5
NF5957_low_5
[»] chr1 (37 HSPs)
chr1 (20-213)||(37726688-37726881)
chr1 (42-97)||(5806571-5806626)
chr1 (42-97)||(6911207-6911262)
chr1 (42-97)||(36361505-36361560)
chr1 (42-97)||(46666430-46666485)
chr1 (42-97)||(47031581-47031636)
chr1 (42-95)||(9115561-9115614)
chr1 (42-95)||(20260381-20260434)
chr1 (44-97)||(50191061-50191114)
chr1 (42-94)||(39329347-39329399)
chr1 (42-93)||(2430223-2430274)
chr1 (42-97)||(32824643-32824698)
chr1 (42-96)||(8331737-8331791)
chr1 (42-96)||(25473978-25474032)
chr1 (42-92)||(51445374-51445424)
chr1 (42-96)||(52630496-52630550)
chr1 (44-97)||(2632575-2632628)
chr1 (44-97)||(29091394-29091447)
chr1 (42-95)||(38964974-38965027)
chr1 (42-95)||(39930181-39930234)
chr1 (42-89)||(13653581-13653628)
chr1 (42-96)||(12190472-12190526)
chr1 (42-96)||(14788446-14788500)
chr1 (42-95)||(25789487-25789540)
chr1 (45-93)||(9832168-9832216)
chr1 (42-94)||(37436914-37436966)
chr1 (43-94)||(1597638-1597689)
chr1 (42-96)||(46960351-46960405)
chr1 (44-93)||(48916319-48916368)
chr1 (46-91)||(49824022-49824067)
chr1 (42-94)||(32202608-32202660)
chr1 (42-97)||(5518798-5518853)
chr1 (42-97)||(45771814-45771869)
chr1 (42-81)||(52699760-52699799)
chr1 (47-96)||(17475609-17475658)
chr1 (44-97)||(24116631-24116684)
chr1 (48-97)||(38519361-38519410)
[»] chr8 (27 HSPs)
chr8 (42-97)||(32661229-32661284)
chr8 (42-96)||(12710367-12710421)
chr8 (42-96)||(35818719-35818773)
chr8 (42-96)||(37392841-37392895)
chr8 (42-96)||(38133033-38133087)
chr8 (42-91)||(10896511-10896560)
chr8 (43-96)||(26061866-26061919)
chr8 (42-95)||(38363804-38363857)
chr8 (42-97)||(7930960-7931015)
chr8 (42-93)||(42755592-42755643)
chr8 (43-97)||(3049730-3049784)
chr8 (42-96)||(25837633-25837687)
chr8 (43-97)||(26602233-26602287)
chr8 (43-96)||(43872261-43872314)
chr8 (42-94)||(18297836-18297888)
chr8 (43-94)||(37982083-37982134)
chr8 (42-96)||(16313802-16313856)
chr8 (48-94)||(18726921-18726967)
chr8 (43-94)||(12649859-12649910)
chr8 (42-97)||(16219236-16219291)
chr8 (42-97)||(25899380-25899435)
chr8 (42-84)||(1554650-1554692)
chr8 (48-94)||(33444923-33444969)
chr8 (42-96)||(35394080-35394134)
chr8 (42-96)||(40197348-40197402)
chr8 (54-95)||(41228976-41229017)
chr8 (44-96)||(33533689-33533741)
[»] chr4 (37 HSPs)
chr4 (42-96)||(27555153-27555207)
chr4 (42-97)||(13230284-13230339)
chr4 (42-97)||(45748090-45748145)
chr4 (42-97)||(48873746-48873801)
chr4 (42-97)||(48879050-48879105)
chr4 (42-96)||(41859341-41859395)
chr4 (42-96)||(47670088-47670142)
chr4 (42-96)||(55968295-55968349)
chr4 (42-95)||(36860051-36860104)
chr4 (44-97)||(51968504-51968557)
chr4 (43-103)||(23686506-23686566)
chr4 (42-97)||(6280216-6280271)
chr4 (42-97)||(39730588-39730643)
chr4 (42-96)||(18405528-18405582)
chr4 (42-96)||(43722990-43723044)
chr4 (42-96)||(45595994-45596048)
chr4 (43-96)||(25932167-25932220)
chr4 (42-97)||(25916307-25916363)
chr4 (42-94)||(27763194-27763246)
chr4 (42-97)||(39835602-39835657)
chr4 (42-89)||(48519186-48519233)
chr4 (48-94)||(27942465-27942511)
chr4 (42-96)||(42773674-42773728)
chr4 (42-95)||(31938164-31938217)
chr4 (42-94)||(40435628-40435680)
chr4 (42-94)||(41744516-41744568)
chr4 (42-97)||(8321970-8322025)
chr4 (42-97)||(35999411-35999466)
chr4 (42-96)||(935852-935906)
chr4 (42-95)||(7258691-7258744)
chr4 (43-96)||(18405129-18405182)
chr4 (43-88)||(50673200-50673245)
chr4 (42-93)||(18931482-18931533)
chr4 (42-88)||(34238249-34238295)
chr4 (48-96)||(12276210-12276259)
chr4 (44-97)||(52469422-52469475)
chr4 (47-95)||(30790275-30790323)
[»] chr7 (29 HSPs)
chr7 (42-95)||(48160868-48160921)
chr7 (42-99)||(48341083-48341140)
chr7 (42-96)||(11329715-11329769)
chr7 (42-96)||(28904481-28904535)
chr7 (42-96)||(33378556-33378610)
chr7 (42-95)||(27214150-27214203)
chr7 (42-95)||(35488484-35488537)
chr7 (44-96)||(16916182-16916234)
chr7 (42-94)||(34930762-34930814)
chr7 (42-97)||(44565766-44565821)
chr7 (42-96)||(43948967-43949021)
chr7 (42-96)||(45265343-45265397)
chr7 (43-96)||(9947287-9947340)
chr7 (42-95)||(45448665-45448718)
chr7 (44-92)||(27248019-27248067)
chr7 (42-96)||(17276454-17276508)
chr7 (42-96)||(25924932-25924986)
chr7 (53-98)||(40212624-40212669)
chr7 (42-90)||(18823890-18823938)
chr7 (42-97)||(38396660-38396715)
chr7 (42-95)||(6656765-6656819)
chr7 (42-91)||(38543920-38543970)
chr7 (42-92)||(45045352-45045402)
chr7 (42-96)||(48313844-48313898)
chr7 (42-94)||(27419519-27419571)
chr7 (44-91)||(44819981-44820028)
chr7 (42-92)||(30686286-30686336)
chr7 (42-92)||(37534397-37534447)
chr7 (43-96)||(45722881-45722934)
[»] chr6 (12 HSPs)
chr6 (42-97)||(8029024-8029079)
chr6 (42-97)||(10246411-10246466)
chr6 (42-100)||(1316737-1316795)
chr6 (42-97)||(2657421-2657476)
chr6 (42-97)||(7053873-7053928)
chr6 (42-96)||(18897643-18897697)
chr6 (42-94)||(11570079-11570131)
chr6 (42-93)||(14170740-14170791)
chr6 (43-96)||(6706048-6706101)
chr6 (42-94)||(9762335-9762387)
chr6 (42-94)||(16968649-16968701)
chr6 (42-71)||(7344789-7344818)
[»] chr5 (26 HSPs)
chr5 (42-97)||(4765855-4765910)
chr5 (42-97)||(18411930-18411985)
chr5 (42-97)||(29543310-29543365)
chr5 (42-96)||(6091437-6091491)
chr5 (42-92)||(8646685-8646735)
chr5 (42-96)||(22936207-22936261)
chr5 (42-94)||(556001-556053)
chr5 (42-93)||(11855950-11856001)
chr5 (42-97)||(14207116-14207171)
chr5 (42-93)||(27481082-27481133)
chr5 (42-92)||(19065800-19065850)
chr5 (42-96)||(32535659-32535713)
chr5 (42-90)||(16720981-16721029)
chr5 (42-97)||(8406615-8406670)
chr5 (42-97)||(12970825-12970880)
chr5 (43-97)||(28429449-28429503)
chr5 (42-96)||(28602278-28602332)
chr5 (42-94)||(36703506-36703558)
chr5 (43-94)||(40276536-40276587)
chr5 (48-93)||(42012485-42012530)
chr5 (48-97)||(43347195-43347244)
chr5 (42-98)||(20962280-20962336)
chr5 (42-97)||(26637316-26637371)
chr5 (43-96)||(6930364-6930417)
chr5 (47-92)||(31583359-31583404)
chr5 (47-92)||(36978433-36978478)
[»] chr3 (31 HSPs)
chr3 (42-97)||(26848743-26848798)
chr3 (42-97)||(33218208-33218263)
chr3 (42-96)||(11239415-11239469)
chr3 (43-96)||(40907988-40908041)
chr3 (42-94)||(20414760-20414812)
chr3 (44-96)||(48340054-48340106)
chr3 (42-97)||(8476603-8476658)
chr3 (42-93)||(43132451-43132502)
chr3 (42-97)||(44952029-44952084)
chr3 (43-97)||(6231797-6231851)
chr3 (43-97)||(24574288-24574342)
chr3 (42-96)||(46359674-46359728)
chr3 (42-92)||(47115152-47115202)
chr3 (42-95)||(28770504-28770557)
chr3 (42-94)||(1098923-1098975)
chr3 (42-93)||(43719220-43719271)
chr3 (44-94)||(29512324-29512374)
chr3 (42-95)||(9320744-9320797)
chr3 (44-96)||(10823014-10823066)
chr3 (42-93)||(24783934-24783985)
chr3 (42-96)||(6832217-6832271)
chr3 (42-96)||(20297515-20297569)
chr3 (42-92)||(31611280-31611330)
chr3 (43-96)||(28693727-28693780)
chr3 (47-95)||(27822994-27823042)
chr3 (47-94)||(31436222-31436269)
chr3 (42-92)||(6927817-6927867)
chr3 (45-91)||(45826064-45826110)
chr3 (43-97)||(53166020-53166074)
chr3 (44-93)||(40584336-40584385)
chr3 (42-90)||(28124731-28124779)
[»] chr2 (38 HSPs)
chr2 (42-97)||(346640-346695)
chr2 (42-97)||(6171512-6171567)
chr2 (42-97)||(23943884-23943939)
chr2 (42-97)||(37533674-37533729)
chr2 (42-101)||(41729425-41729484)
chr2 (42-97)||(14777793-14777848)
chr2 (42-93)||(37233155-37233206)
chr2 (42-97)||(40569739-40569794)
chr2 (43-97)||(11071326-11071380)
chr2 (42-96)||(37192244-37192298)
chr2 (42-96)||(42674956-42675010)
chr2 (42-95)||(20426777-20426830)
chr2 (42-94)||(17965707-17965759)
chr2 (42-93)||(28311991-28312042)
chr2 (42-97)||(40951154-40951209)
chr2 (42-88)||(2521381-2521427)
chr2 (42-96)||(4559281-4559335)
chr2 (42-92)||(21737703-21737753)
chr2 (42-92)||(26309993-26310043)
chr2 (42-92)||(45693915-45693965)
chr2 (42-95)||(5770405-5770458)
chr2 (42-94)||(638318-638370)
chr2 (42-93)||(13760692-13760743)
chr2 (42-92)||(1623078-1623128)
chr2 (42-96)||(2050588-2050642)
chr2 (42-91)||(9734141-9734190)
chr2 (42-94)||(39819414-39819466)
chr2 (42-97)||(18713951-18714006)
chr2 (43-93)||(3902182-3902232)
chr2 (43-97)||(7007306-7007360)
chr2 (46-88)||(8868938-8868980)
chr2 (42-84)||(11763695-11763737)
chr2 (44-93)||(14832536-14832585)
chr2 (42-94)||(5003130-5003182)
chr2 (42-90)||(25724753-25724801)
chr2 (48-88)||(27358263-27358303)
chr2 (43-71)||(41750276-41750304)
chr2 (48-88)||(45408981-45409021)
[»] scaffold0006 (2 HSPs)
scaffold0006 (42-96)||(201648-201702)
scaffold0006 (42-89)||(143342-143389)
[»] scaffold0702 (1 HSPs)
scaffold0702 (42-96)||(3860-3914)
[»] scaffold0662 (1 HSPs)
scaffold0662 (42-96)||(4188-4242)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 37726881 - 37726688
Alignment:
Q  20 catgggaagattataatgttaaccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatgttatttgtgctacacgatgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37726881 catgggaagattataatgttaaccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatgttatttgtgctacacgatgt 37726782  T
Q  120 gacttttcgttgttgtagagtttgatgcttcaaagttcaaacacttttttgctcatcgaggctgctttgtttcctttagtaaagttgagaatta 213  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37726781 gacttttcattgttgtagagtttgatgcttcaaagttcaaacacttttttgctcatcgaggctgctttgtttactttagtaaagttgagaatta 37726688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 5806571 - 5806626
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5806571 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 5806626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 6911262 - 6911207
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  6911262 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 6911207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 36361560 - 36361505
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  36361560 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 36361505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 46666485 - 46666430
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  46666485 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 46666430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 47031636 - 47031581
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  47031636 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 47031581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 9115614 - 9115561
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  9115614 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 9115561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 20260381 - 20260434
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  20260381 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 20260434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 50191061 - 50191114
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  50191061 aaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 50191114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 39329399 - 39329347
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  39329399 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacc 39329347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 2430274 - 2430223
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  2430274 ccaaggaacgttattcctaggaataaatttagtaaacttgaaacaaacacac 2430223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 32824698 - 32824643
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||||    
T  32824698 ccaaggaatgttattcctaggaataaatttcgtaaatttgaaacaaacacacccta 32824643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 8331791 - 8331737
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  8331791 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 8331737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 25474032 - 25473978
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  25474032 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 25473978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 51445374 - 51445424
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  51445374 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacaca 51445424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 52630550 - 52630496
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  52630550 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccct 52630496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 2632628 - 2632575
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  2632628 aaggaatgttattcctagaaataaatttagtaaacttgaaacaaatacacccta 2632575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 29091447 - 29091394
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  29091447 aaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacacccta 29091394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 38964974 - 38965027
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  38964974 ccaaggaatgttattcctaggaataaatttggtaaacttaaaacaaacacaccc 38965027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 39930234 - 39930181
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  39930234 ccaaagaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 39930181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 13653628 - 13653581
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaac 89  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  13653628 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaac 13653581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 12190472 - 12190526
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||| |||||||||||||  | |||||||||||||||||||||    
T  12190472 ccaaggaatgttattcttaggaataaatttgataaacttgaaacaaacacaccct 12190526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 14788500 - 14788446
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||| |||||||||| || ||||| |||||||||||||||    
T  14788500 ccaaggaatgttattcctaagaataaatttggtaaacttaaaacaaacacaccct 14788446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 25789540 - 25789487
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||||||    
T  25789540 ccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacaccc 25789487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 9832168 - 9832216
Alignment:
Q  45 aggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||    
T  9832168 aggaatgttattcctaggaataaatttgataaacttgaaacaaacacac 9832216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 37436914 - 37436966
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||| || |||||||||| || |||||||||||||||||||    
T  37436914 ccaaggaatgttattcttaagaataaatttggtaaacttgaaacaaacacacc 37436966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 1597638 - 1597689
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    ||||||||||||||||||  ||||||||| || |||||||||||||||||||    
T  1597638 caaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacacacc 1597689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 46960405 - 46960351
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||| |||||||||||||||||||||||||  | || ||||||||||||||||||    
T  46960405 ccaaagaatgttattcctaggaataaatttgataaatttgaaacaaacacaccct 46960351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 48916319 - 48916368
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    ||||||||||||||||| ||||||||||  | ||||||||||||||||||    
T  48916319 aaggaatgttattcctaagaataaatttgataaacttgaaacaaacacac 48916368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 49824022 - 49824067
Alignment:
Q  46 ggaatgttattcctaggaataaatttagtgaacttgaaacaaacac 91  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||    
T  49824022 ggaatgttattcctaggaataaatttgataaacttgaaacaaacac 49824067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 32202608 - 32202660
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||  |||||||||  | |||||||||||||||||||    
T  32202608 ccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacacacc 32202660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 5518798 - 5518853
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||| | |||||||||| || ||||| ||||||||| ||||||    
T  5518798 ccaaggaatgttattccaatgaataaatttggtaaacttcaaacaaacagacccta 5518853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 45771869 - 45771814
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||| || ||||||| | ||||||||||| || ||||||||||||||||||||||    
T  45771869 ccaagaaaggttattcatgggaataaatttggtaaacttgaaacaaacacacccta 45771814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 52699760 - 52699799
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttg 81  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  52699760 ccaaggaatgttattcctaggaataaatttggtaaacttg 52699799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 17475609 - 17475658
Alignment:
Q  47 gaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||| |||||||||||||  | |||||||||| ||||||||||    
T  17475609 gaatgttattcttaggaataaatttgataaacttgaaacgaacacaccct 17475658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 24116631 - 24116684
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||| || ||||||||||  | ||||| ||||||||||||||||    
T  24116631 aaggaatgttattcttaagaataaatttgttaaacttaaaacaaacacacccta 24116684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 38519361 - 38519410
Alignment:
Q  48 aatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||| |||||||||| || || |||||||||||||| ||||    
T  38519361 aatgttattcctacgaataaatttggtaaatttgaaacaaacacaaccta 38519410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 32661229 - 32661284
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32661229 ccaaggaatgttattcctaggaataaatttagtaaacttgaaacaaacacacccta 32661284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 12710421 - 12710367
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  12710421 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 12710367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 35818719 - 35818773
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  35818719 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 35818773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 37392841 - 37392895
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  37392841 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 37392895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 38133033 - 38133087
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  38133033 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccct 38133087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 10896511 - 10896560
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacac 91  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  10896511 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacac 10896560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 26061919 - 26061866
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  26061919 caaggaatgttattcctaggaataaatttggtaaacttaaaacaaacacaccct 26061866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 38363857 - 38363804
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||    
T  38363857 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccc 38363804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 7931015 - 7930960
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||| ||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  7931015 ccaaagaatgttattcctagaaataaatttggtaaacttgaaacaaacacacccta 7930960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 42755643 - 42755592
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  42755643 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacac 42755592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 3049784 - 3049730
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||| ||||||||||  | ||||||||||||||||||||||    
T  3049784 caaggaatgttattcctatgaataaatttgataaacttgaaacaaacacacccta 3049730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 25837687 - 25837633
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||||    
T  25837687 ccaaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacacaccct 25837633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 26602233 - 26602287
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||| |||| ||||||||| || ||||||||||||||||||||||    
T  26602233 caaggaatgttatttctagcaataaatttggtaaacttgaaacaaacacacccta 26602287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 43872261 - 43872314
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||| ||||||||| |  |||||||||||||||||||||    
T  43872261 caaggaatgttattcctagaaataaatttggcaaacttgaaacaaacacaccct 43872314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 18297888 - 18297836
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||| |||||||||  | |||||||||||||||||||    
T  18297888 ccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacacc 18297836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 37982083 - 37982134
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    ||||||||||||||||||  ||||||||| || |||||||||||||||||||    
T  37982083 caaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacacacc 37982134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 16313802 - 16313856
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||  |||||||||  | |||||||||||||||||||||    
T  16313802 ccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacacaccct 16313856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 18726921 - 18726967
Alignment:
Q  48 aatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||    
T  18726921 aatgttattcctagaaataaatttggtaaacttgaaacaaacacacc 18726967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 12649910 - 12649859
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||| |||||||| ||| ||||||||| || |||||||||||||||||||    
T  12649910 caaggattgttattcgtagaaataaatttggtaaacttgaaacaaacacacc 12649859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 16219236 - 16219291
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||| ||||||||||||||||||||   | ||||| ||||||||||||||||    
T  16219236 ccaaggaacgttattcctaggaataaattggataaacttaaaacaaacacacccta 16219291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 25899435 - 25899380
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||  |||||||||  |  |||||||||||||||||||||    
T  25899435 ccaaggaatgttattcctaaaaataaatttgttacacttgaaacaaacacacccta 25899380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 1554650 - 1554692
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaa 84  Q
    ||||||||||||||||||| |||||||||| || |||||||||    
T  1554650 ccaaggaatgttattcctaagaataaatttggtaaacttgaaa 1554692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 33444923 - 33444969
Alignment:
Q  48 aatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||| || ||||||||| ||| |||||||||||||||||||    
T  33444923 aatgttattcttatgaataaattcagtaaacttgaaacaaacacacc 33444969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 35394134 - 35394080
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||| |||||||||| ||| ||||||||||  | |||||||||||||||||||||    
T  35394134 ccaaagaatgttattactaagaataaatttgataaacttgaaacaaacacaccct 35394080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 40197348 - 40197402
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||| |||| |||||||||||||||||||| || |||||||| |||||| |||||    
T  40197348 ccaaagaatattattcctaggaataaatttggtaaacttgaagcaaacaaaccct 40197402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 41228976 - 41229017
Alignment:
Q  54 attcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||| ||||||||||| || ||||||||||||||||||||    
T  41228976 attccttggaataaatttggtaaacttgaaacaaacacaccc 41229017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 33533689 - 33533741
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||  |||||||||||||||||||    |||||||||||||||||||||    
T  33533689 aaggaataatattcctaggaataaatttgacaaacttgaaacaaacacaccct 33533741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 27555207 - 27555153
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27555207 ccaaggaatgttattcctaggaataaatttagtaaacttgaaacaaacacaccct 27555153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 13230284 - 13230339
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  13230284 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 13230339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 45748090 - 45748145
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  45748090 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 45748145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 48873801 - 48873746
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  48873801 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 48873746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 48879105 - 48879050
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  48879105 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 48879050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 41859341 - 41859395
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  41859341 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 41859395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 47670142 - 47670088
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  47670142 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 47670088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 55968295 - 55968349
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  55968295 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 55968349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 36860051 - 36860104
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  36860051 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 36860104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 51968557 - 51968504
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  51968557 aaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 51968504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 23686566 - 23686506
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatgttat 103  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||||||||| |||||    
T  23686566 caaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccctaagttat 23686506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 6280216 - 6280271
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  6280216 ccaaggaatgttattcctatgaataaatttggtaaacttgaaacaaacacacccta 6280271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 39730588 - 39730643
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  39730588 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccta 39730643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 18405528 - 18405582
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  18405528 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccct 18405582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 43723044 - 43722990
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  43723044 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccct 43722990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 45596048 - 45595994
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  45596048 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccct 45595994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 25932220 - 25932167
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  25932220 caaggaatgttattcctaggaataaatttgggaaacttgaaacaaacacaccct 25932167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 25916307 - 25916363
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaactt-gaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  25916307 ccaaggaatgttattcctaggaataaatttggtaaacttagaaacaaacacacccta 25916363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 27763194 - 27763246
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  27763194 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacc 27763246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 39835602 - 39835657
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||    
T  39835602 ccaaggaatgttattcatagaaataaatttggtaaacttgaaacaaacacacccta 39835657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 48519186 - 48519233
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaac 89  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  48519186 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaac 48519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 27942511 - 27942465
Alignment:
Q  48 aatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||||||| || |||||||||||||||||||    
T  27942511 aatgttattcctaggaataaatttggtaaacttgaaacaaacacacc 27942465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 42773728 - 42773674
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||||| ||||    
T  42773728 ccaaggaatgttatttctaggaataaatttggtaaacttgaaacaaacacgccct 42773674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 31938164 - 31938217
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    ||||||||||||||||||| ||||||||||  | ||||||||||||||||||||    
T  31938164 ccaaggaatgttattcctatgaataaatttgataaacttgaaacaaacacaccc 31938217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 40435680 - 40435628
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||    
T  40435680 ccaaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacacacc 40435628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 41744516 - 41744568
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||| ||||||||||||||| ||||||||| || |||||||||||||||||||    
T  41744516 ccaatgaatgttattcctagaaataaatttggtaaacttgaaacaaacacacc 41744568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 8322025 - 8321970
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||| ||||||||||||||  ||||||||| || ||||||||||||||||||||||    
T  8322025 ccaaagaatgttattcctaaaaataaatttggtaaacttgaaacaaacacacccta 8321970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 35999466 - 35999411
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||| || |||||||||| || ||||||||||||||| ||||||    
T  35999466 ccaaggaatgttattcttaagaataaatttggtaaacttgaaacaaacaaacccta 35999411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 935906 - 935852
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||| |||||||||| || |||||||||| || |||||||||||||||||||||    
T  935906 ccaagaaatgttattcttaagaataaatttggtaaacttgaaacaaacacaccct 935852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 7258744 - 7258691
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    ||||||||||||||||||  ||||||||||  | ||||||||||||||||||||    
T  7258744 ccaaggaatgttattcctgagaataaatttgataaacttgaaacaaacacaccc 7258691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 18405182 - 18405129
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||| |||||||||| |  ||||| |||||||||||||||    
T  18405182 caaggaatgttattcctaagaataaatttggcaaacttaaaacaaacacaccct 18405129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 50673200 - 50673245
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaa 88  Q
    |||||||||||||||||||||||||||||  | |||||||||||||    
T  50673200 caaggaatgttattcctaggaataaatttgataaacttgaaacaaa 50673245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 18931533 - 18931482
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    ||||||||||||||||||| ||||||||||  | ||||| ||||||||||||    
T  18931533 ccaaggaatgttattcctaagaataaatttgataaacttaaaacaaacacac 18931482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 34238249 - 34238295
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaa 88  Q
    ||||||||||||||||||| ||||||||||  | |||||||||||||    
T  34238249 ccaaggaatgttattcctatgaataaatttgataaacttgaaacaaa 34238295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 12276210 - 12276259
Alignment:
Q  48 aatgttattcctaggaataaatttagtgaacttgaaacaaa-cacaccct 96  Q
    |||||||||||||  |||||||||||| ||||||||||||| ||||||||    
T  12276210 aatgttattcctataaataaatttagtaaacttgaaacaaatcacaccct 12276259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 52469475 - 52469422
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||| ||||||||||  | ||||| ||||||||||| ||||    
T  52469475 aaggaatgttattcctaagaataaatttgattaacttaaaacaaacacatccta 52469422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 30790323 - 30790275
Alignment:
Q  47 gaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||| |||||| |||||||||  | ||||||||||||||||||||    
T  30790323 gaatgttactcctagaaataaatttgctaaacttgaaacaaacacaccc 30790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 48160868 - 48160921
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48160868 ccaaggaatgttattcctaggaataaatttagtaaacttgaaacaaacacaccc 48160921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 48341140 - 48341083
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatg 99  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  48341140 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctatg 48341083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 11329769 - 11329715
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  11329769 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 11329715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 28904481 - 28904535
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  28904481 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 28904535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 33378610 - 33378556
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  33378610 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 33378556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 27214150 - 27214203
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  27214150 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 27214203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 35488484 - 35488537
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  35488484 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccc 35488537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 16916182 - 16916234
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  16916182 aaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 16916234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 34930762 - 34930814
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  34930762 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacc 34930814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 44565821 - 44565766
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  44565821 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccta 44565766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 43949021 - 43948967
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || ||||||||||||| |||||||    
T  43949021 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaatacaccct 43948967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 45265343 - 45265397
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  45265343 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 45265397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 9947287 - 9947340
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  9947287 caaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccct 9947340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 45448718 - 45448665
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  45448718 ccaaggaatgttattcataggaataaatttggtaaacttgaaacaaacacaccc 45448665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 27248067 - 27248019
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||    
T  27248067 aaggaatgttattcctaggaataaatttggtaaacttgaaacaaacaca 27248019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 17276454 - 17276508
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||| ||||||||| || || ||||||||||||||||||    
T  17276454 ccaaggaatgttattcctagaaataaattttgtaaaattgaaacaaacacaccct 17276508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 25924932 - 25924986
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||| ||||||||||||| || ||| |||||||||||||||||    
T  25924932 ccaaggaatgttattcttaggaataaatttggtaaacatgaaacaaacacaccct 25924986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 40212669 - 40212624
Alignment:
Q  53 tattcctaggaataaatttagtgaacttgaaacaaacacaccctat 98  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  40212669 tattcctaggaataaatttggtaaacttgaaacaaacacaccctat 40212624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 18823938 - 18823890
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaaca 90  Q
    |||| ||||||||||||||||||||||||| || |||||||||||||||    
T  18823938 ccaaagaatgttattcctaggaataaatttggtaaacttgaaacaaaca 18823890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 38396660 - 38396715
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||| ||||| |||||||||||||||||||  | ||||||||||||||||||||||    
T  38396660 ccaatgaatgctattcctaggaataaatttgataaacttgaaacaaacacacccta 38396715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 6656765 - 6656819
Alignment:
Q  42 ccaaggaatgtt-attcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||    
T  6656765 ccaaggaatgtttattcctaagaataaatttagtaaacttgaaagaaacacaccc 6656819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 38543970 - 38543920
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaac-ttgaaacaaacac 91  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  38543970 ccaaggaatgttattcctaagaataaatttagtaaactttgaaacaaacac 38543920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 45045402 - 45045352
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    ||||||||| ||||||||| |||||||||| || |||||||||||||||||    
T  45045402 ccaaggaatattattcctaagaataaatttggtaaacttgaaacaaacaca 45045352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 48313898 - 48313844
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||| |||||||||||||| |||||||||  | |||||||||||||||||||||    
T  48313898 ccaagaaatgttattcctagaaataaatttgataaacttgaaacaaacacaccct 48313844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 27419519 - 27419571
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    ||||| |||||||||||||  ||||||||| || |||||||||||||||||||    
T  27419519 ccaagaaatgttattcctaaaaataaatttggtaaacttgaaacaaacacacc 27419571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 44820028 - 44819981
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacac 91  Q
    |||||||||||||||||  ||||||||| || ||||||||||||||||    
T  44820028 aaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacac 44819981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 30686286 - 30686336
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    |||||||||||||||||||| |||||||||  | ||||| |||||||||||    
T  30686286 ccaaggaatgttattcctagaaataaatttgataaacttaaaacaaacaca 30686336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 37534397 - 37534447
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    ||||||||||||||| |||| |||||||||  | |||||||||||||||||    
T  37534397 ccaaggaatgttatttctagaaataaatttgataaacttgaaacaaacaca 37534447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 45722934 - 45722881
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||  ||||||||| || ||||||||| ||| |||||||    
T  45722934 caaggaatgttattcctaaaaataaatttggtaaacttgaaataaagacaccct 45722881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 8029079 - 8029024
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  8029079 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 8029024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 10246411 - 10246466
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  10246411 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 10246466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 1316795 - 1316737
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatgt 100  Q
    |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  1316795 ccaaagaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctatgt 1316737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 2657476 - 2657421
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  2657476 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccta 2657421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 7053873 - 7053928
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  7053873 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacacccta 7053928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 18897697 - 18897643
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  18897697 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 18897643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 11570079 - 11570131
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||||||||||||| || ||||||||||||| |||||    
T  11570079 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaagacacc 11570131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 14170791 - 14170740
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  14170791 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacac 14170740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 6706048 - 6706101
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||| |||||| || || ||||||||||||||| |||||    
T  6706048 caaggaatgttattcctagaaataaaattggtaaacttgaaacaaacataccct 6706101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 9762335 - 9762387
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||  |||||| || || |||||||||||||||||||    
T  9762335 ccaaggaatgttattcctaataataaacttggtaaacttgaaacaaacacacc 9762387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 16968701 - 16968649
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||| ||||||||||||||| |||||||||  | |||||||||||||||||||    
T  16968701 ccaaagaatgttattcctagaaataaatttgataaacttgaaacaaacacacc 16968649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 7344789 - 7344818
Alignment:
Q  42 ccaaggaatgttattcctaggaataaattt 71  Q
    ||||||||||||||||||||||||||||||    
T  7344789 ccaaggaatgttattcctaggaataaattt 7344818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 4765855 - 4765910
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  4765855 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 4765910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 18411985 - 18411930
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  18411985 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 18411930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 29543310 - 29543365
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  29543310 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 29543365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 6091491 - 6091437
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  6091491 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 6091437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 8646685 - 8646735
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8646685 ccaaggaatgttattcctaggaataaatttagtaaacttgaaacaaacaca 8646735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 22936207 - 22936261
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  22936207 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 22936261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 556001 - 556053
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  556001 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacc 556053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 11855950 - 11856001
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  11855950 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacac 11856001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 14207116 - 14207171
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  14207116 ccaatgaatgttattcctaggaataaattttgtaaacttgaaacaaacacacccta 14207171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 27481133 - 27481082
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  27481133 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacac 27481082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 19065800 - 19065850
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  19065800 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacaca 19065850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 32535713 - 32535659
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||||    
T  32535713 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccct 32535659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 16720981 - 16721029
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaaca 90  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  16720981 ccaatgaatgttattcctaggaataaatttagtaaacttgaaacaaaca 16721029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 8406670 - 8406615
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||||||||    
T  8406670 ccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacacccta 8406615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 12970825 - 12970880
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||||||||    
T  12970825 ccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacacccta 12970880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 28429503 - 28429449
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||| |||| ||||||||| || ||||||||||||||||||||||    
T  28429503 caaggaatgttatttctagaaataaatttggtaaacttgaaacaaacacacccta 28429449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 28602332 - 28602278
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||||    
T  28602332 ccaaggaatgttattcctaaaaataaatttggtaaacttgaaacaaacacaccct 28602278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 36703558 - 36703506
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    ||||||||||||||||||| |||||||||| || || ||||||||||||||||    
T  36703558 ccaaggaatgttattcctatgaataaatttggtaaatttgaaacaaacacacc 36703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 40276536 - 40276587
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||| | | ||||||||||||| |||||||||||||||||||    
T  40276536 caaggaatgttattaccaagaataaatttagtaaacttgaaacaaacacacc 40276587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 42012485 - 42012530
Alignment:
Q  48 aatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||    
T  42012485 aatgttattcctaaaaataaatttagtaaacttgaaacaaacacac 42012530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 43347195 - 43347244
Alignment:
Q  48 aatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||| |||||||||| |  ||||||||||||||||||||||    
T  43347195 aatgttattcctaagaataaatttcgaaaacttgaaacaaacacacccta 43347244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 20962336 - 20962280
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctat 98  Q
    ||||||||||||||||||| ||||||||||  | ||||| ||||||||||| |||||    
T  20962336 ccaaggaatgttattcctatgaataaatttgataaacttaaaacaaacacatcctat 20962280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 26637316 - 26637371
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||  |||||||||  | ||||||||| ||||||||||||    
T  26637316 ccaaggaatgttattcctaaaaataaatttgataaacttgaaataaacacacccta 26637371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 6930417 - 6930364
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||| || ||||||||||  | ||||| |||||||||||||||    
T  6930417 caaggaatgttattcatatgaataaatttgataaacttaaaacaaacacaccct 6930364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 31583359 - 31583404
Alignment:
Q  47 gaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    ||||||||||| ||| |||||||||||| ||||| |||||||||||    
T  31583359 gaatgttattcgtagaaataaatttagtaaacttaaaacaaacaca 31583404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 36978433 - 36978478
Alignment:
Q  47 gaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    ||||||||||||||  |||||||||| | |||||||||||||||||    
T  36978433 gaatgttattcctataaataaatttaataaacttgaaacaaacaca 36978478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 26848798 - 26848743
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  26848798 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 26848743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 33218208 - 33218263
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  33218208 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 33218263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 11239415 - 11239469
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  11239415 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 11239469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 40908041 - 40907988
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  40908041 caaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 40907988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 20414760 - 20414812
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  20414760 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacc 20414812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 48340054 - 48340106
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  48340054 aaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 48340106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 8476603 - 8476658
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  8476603 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacacccta 8476658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 43132451 - 43132502
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  43132451 ccaaggaatgttattcctaagaataaatttagtaaacttgaaacaaacacac 43132502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 44952084 - 44952029
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  44952084 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacacccta 44952029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 6231797 - 6231851
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  6231797 caaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccta 6231851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 24574342 - 24574288
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  24574342 caaggaatgttattcctatgaataaatttggtaaacttgaaacaaacacacccta 24574288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 46359728 - 46359674
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  46359728 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 46359674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 47115152 - 47115202
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  47115152 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacaca 47115202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 28770504 - 28770557
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  28770504 ccaaggaatgttattcctaggaataaatttggtaaatttgaaacaaacacaccc 28770557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 1098975 - 1098923
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  1098975 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacacc 1098923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 43719220 - 43719271
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  43719220 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacac 43719271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 29512374 - 29512324
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||||||||||| || || ||||||||||||||||    
T  29512374 aaggaatgttattcctaggaataaatttggtaaatttgaaacaaacacacc 29512324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 9320744 - 9320797
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    ||||||||||||||||||| ||||||||||  | ||||||||||||||||||||    
T  9320744 ccaaggaatgttattcctatgaataaatttcataaacttgaaacaaacacaccc 9320797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 10823014 - 10823066
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||| |||||||||  | |||||||||||||||||||||    
T  10823014 aaggaatgttattcctagaaataaatttgctaaacttgaaacaaacacaccct 10823066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 24783985 - 24783934
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||||| || |||||||||| || ||||||||||||||||||    
T  24783985 ccaaggaatgttattcttatgaataaatttggtaaacttgaaacaaacacac 24783934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 6832217 - 6832271
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||| |||||||||| ||||||||||||| || || ||||||||||||||||||    
T  6832217 ccaagtaatgttattcttaggaataaatttggtaaatttgaaacaaacacaccct 6832271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 20297569 - 20297515
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||| |||||||||||||| |||||||||| || ||||| |||||||||||||||    
T  20297569 ccaaagaatgttattcctaagaataaatttggtaaacttaaaacaaacacaccct 20297515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 31611280 - 31611330
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    |||||||||||||||| || |||||||||| || |||||||||||||||||    
T  31611280 ccaaggaatgttattcataagaataaatttggtaaacttgaaacaaacaca 31611330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 28693727 - 28693780
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||  ||||| ||||||||||||||||| || ||||||||||||||||||    
T  28693727 caaggaaaattatttctaggaataaatttagtaaatttgaaacaaacacaccct 28693780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 27823042 - 27822994
Alignment:
Q  47 gaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||||||    
T  27823042 gaatgttattcctaaaaataaatttggtaaacttgaaacaaacacaccc 27822994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 31436222 - 31436269
Alignment:
Q  47 gaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||| | |||||||||||| || |||||||||||||||||||    
T  31436222 gaatgttatttccaggaataaatttggtaaacttgaaacaaacacacc 31436269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 6927867 - 6927817
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    |||||||||||||||||||| |||||||||  | ||||| |||||||||||    
T  6927867 ccaaggaatgttattcctagtaataaatttgataaacttaaaacaaacaca 6927817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 45826110 - 45826064
Alignment:
Q  45 aggaatgttattcctaggaataaatttagtgaacttgaaacaaacac 91  Q
    ||||| ||||||||||||||||||| |||| |||| |||||||||||    
T  45826110 aggaaagttattcctaggaataaatctagtaaactggaaacaaacac 45826064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 53166020 - 53166074
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||| ||| ||||||||   | ||||||||||||||||||||||    
T  53166020 caaggaatgttattcttagaaataaattggataaacttgaaacaaacacacccta 53166074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 40584385 - 40584336
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||| |||||||||||||  |  |||||||||||||||||    
T  40584385 aaggaatgttattcttaggaataaatttgttacacttgaaacaaacacac 40584336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 28124731 - 28124779
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaaca 90  Q
    ||||||||||||| |||||  ||||||||| || |||||||||||||||    
T  28124731 ccaaggaatgttaatcctaaaaataaatttggtaaacttgaaacaaaca 28124779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 346640 - 346695
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  346640 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 346695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 6171567 - 6171512
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  6171567 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 6171512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 23943939 - 23943884
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  23943939 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacacccta 23943884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 37533729 - 37533674
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  37533729 ccaaggaatgttattcctagaaataaatttagtaaacttgaaacaaacacacccta 37533674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 41729425 - 41729484
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccctatgtt 101  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||    
T  41729425 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacacaccctatgtt 41729484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 14777793 - 14777848
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  14777793 ccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccta 14777848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 37233206 - 37233155
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  37233206 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacac 37233155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 40569794 - 40569739
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  40569794 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacacccta 40569739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 11071380 - 11071326
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  11071380 caaggaatgttattcctatgaataaatttggtaaacttgaaacaaacacacccta 11071326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 37192298 - 37192244
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  37192298 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccct 37192244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 42674956 - 42675010
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  42674956 ccaagaaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 42675010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 20426777 - 20426830
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  20426777 ccaaggaatgttattcctaggaataaatttggtaaactttaaacaaacacaccc 20426830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 17965759 - 17965707
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  17965759 ccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacacc 17965707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 28311991 - 28312042
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  28311991 ccaaggaatgttattcctatgaataaatttggtaaacttgaaacaaacacac 28312042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 40951154 - 40951209
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||||||||||||| || || |||||||||||| ||||||    
T  40951154 ccaaggaatgttattcctaggaataaatttggtaaatttgaaacaaacatacccta 40951209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 2521427 - 2521381
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaa 88  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  2521427 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaa 2521381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 4559335 - 4559281
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||| ||| ||||||||| || |||||||||||||||||||||    
T  4559335 ccaaggaatgttattcttagaaataaatttggtaaacttgaaacaaacacaccct 4559281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 21737703 - 21737753
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  21737703 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacaca 21737753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 26310043 - 26309993
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  26310043 ccaaggaatgctattcctaggaataaatttggtaaacttgaaacaaacaca 26309993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 45693965 - 45693915
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  45693965 ccaaggaatgttattcctaagaataaatttggtaaacttgaaacaaacaca 45693915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 5770405 - 5770458
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccc 95  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||||||    
T  5770405 ccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacaccc 5770458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 638370 - 638318
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||||||||||||| || ||||| || ||||||||||    
T  638370 ccaaggaatgttattcctaggaataaatttggtaaacttaaatcaaacacacc 638318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 13760743 - 13760692
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||||||||| ||||||||| |  ||||||||||||||||||    
T  13760743 ccaaggaatgttattcctagaaataaatttggcaaacttgaaacaaacacac 13760692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 1623128 - 1623078
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacaca 92  Q
    ||||| ||||||||| ||||||||||||||||| || ||||||||||||||    
T  1623128 ccaagaaatgttattactaggaataaatttagtaaaattgaaacaaacaca 1623078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 2050642 - 2050588
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||  |||||||||  | |||||||||||||||||||||    
T  2050642 ccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacacaccct 2050588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 9734141 - 9734190
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacac 91  Q
    |||||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  9734141 ccaaggaatgttattcctagaaataaatttggtaaacttaaaacaaacac 9734190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 39819466 - 39819414
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||| |||||||||||||| |||||||||| || || ||||||||||||||||    
T  39819466 ccaaagaatgttattcctatgaataaatttggtaaatttgaaacaaacacacc 39819414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 18713951 - 18714006
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||||||||||||||||||  ||||||||| || | |||||| |||||||||||||    
T  18713951 ccaaggaatgttattcctataaataaatttggtaagcttgaatcaaacacacccta 18714006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 3902232 - 3902182
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    ||||||||||||||||||  ||||||| | || ||||||||||||||||||    
T  3902232 caaggaatgttattcctaaaaataaatatggtaaacttgaaacaaacacac 3902182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 7007360 - 7007306
Alignment:
Q  43 caaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacccta 97  Q
    |||| |||||||||||||  ||||||||| || ||||| ||||||||||||||||    
T  7007360 caagaaatgttattcctaataataaatttggtaaacttaaaacaaacacacccta 7007306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 8868938 - 8868980
Alignment:
Q  46 ggaatgttattcctaggaataaatttagtgaacttgaaacaaa 88  Q
    |||| ||||||| |||||||||||||||| |||||||||||||    
T  8868938 ggaaagttattcgtaggaataaatttagtaaacttgaaacaaa 8868980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 11763695 - 11763737
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaa 84  Q
    ||||||||||||||||||| |||||||||| || |||||||||    
T  11763695 ccaaggaatgttattcctaagaataaatttggtaaacttgaaa 11763737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 14832585 - 14832536
Alignment:
Q  44 aaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacac 93  Q
    |||||||||||||| | | ||||||||| || ||||||||||||||||||    
T  14832585 aaggaatgttattcttggaaataaatttggtaaacttgaaacaaacacac 14832536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 5003130 - 5003182
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacacc 94  Q
    |||||||||||||||||||  ||||||||| || || || |||||||||||||    
T  5003130 ccaaggaatgttattcctataaataaatttggtaaattttaaacaaacacacc 5003182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 25724801 - 25724753
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaaca 90  Q
    |||||||| ||||||| | ||||||||| |||| |||||||||||||||    
T  25724801 ccaaggaaagttattcttgggaataaatctagtaaacttgaaacaaaca 25724753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 27358263 - 27358303
Alignment:
Q  48 aatgttattcctaggaataaatttagtgaacttgaaacaaa 88  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  27358263 aatgttattcctaggaataaatttggtaaacttaaaacaaa 27358303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 41750304 - 41750276
Alignment:
Q  43 caaggaatgttattcctaggaataaattt 71  Q
    |||||||||||||||||||||||||||||    
T  41750304 caaggaatgttattcctaggaataaattt 41750276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 45409021 - 45408981
Alignment:
Q  48 aatgttattcctaggaataaatttagtgaacttgaaacaaa 88  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  45409021 aatgttattcctaggaataaatttggtaaacttaaaacaaa 45408981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 201702 - 201648
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  201702 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 201648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 143389 - 143342
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaac 89  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  143389 ccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaac 143342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 3860 - 3914
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  3860 ccaaggaatgttattcataggaataaatttggtgcacttgaaacaaacacaccct 3914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 4242 - 4188
Alignment:
Q  42 ccaaggaatgttattcctaggaataaatttagtgaacttgaaacaaacacaccct 96  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  4242 ccaaggaatgttattcataggaataaatttggtgcacttgaaacaaacacaccct 4188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University