View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5958_high_1 (Length: 593)

Name: NF5958_high_1
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5958_high_1
NF5958_high_1
[»] chr3 (1 HSPs)
chr3 (89-593)||(39136080-39136590)


Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 89 - 593
Target Start/End: Complemental strand, 39136590 - 39136080
Alignment:
Q  89 ctgatttttgtctctctttaaaaagtgtgggtattgtgtcaaaggtgagtgagtagaaaaacagagggacactggagacagaagaaggacagacaatatt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  39136590 ctgatttttgtctctctttaaaaagtgtgggtattgtgtcaaaggtgagt----agaaaaacagagggacactggagacagaagaagtacagacaatatt 39136495  T
Q  189 gaagaagatgggaatgggagtgggctgttttcctcaaaaattaatttcctatatcacccacatttcctaaatatatatacattccattctccaacaaata 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  39136494 gaagaagatgggaatgggagtgggctgttttcctcaaaaattaatttcctatatcacccacatttcctaaatatatgtactttccattctccaacaaata 39136395  T
Q  289 tgcttcttcctaattactatactacccctcccctgaagagtcaataccaccaagcttctctatggtcaaagtttgtttgacgcatttacgatgttttcat 388  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  39136394 tgcttcttcctaattactatactacccctcccctcaagagtcaataccaccaagcttctctatggtcaaagtttgtttgacgcatttacgaagtttgcat 39136295  T
Q  389 tcttgatcgttgaattaagattagat----------agacattttgttttaacgtatttacgatgtttacatttctgatcgttgaattaagattagacga 478  Q
    ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136294 tcttgatcgttgaattaagattagatgagatgatgaagacattttgttttaacgtatttacgatgtttacatttctgatcgttgaattaagattagacga 39136195  T
Q  479 tgaagactttttatttaaattagttaagaaaacgttgaaatttaaattctttcactttggtcgaaaaatcacgtatacatcgaatgtgtcaaattttgag 578  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  39136194 tgaagactttttatttaaattagttaagaacacgttgaaatttaaattctttcactttggtccaaaaaccacgtatacatcgaatgtgtcaaattttgag 39136095  T
Q  579 tgcggataatctgat 593  Q
    |||||||||||||||    
T  39136094 tgcggataatctgat 39136080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University