View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_high_27 (Length: 209)
Name: NF5958_high_27
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 21537236 - 21537440
Alignment:
| Q |
1 |
ttttgaaacaccgtgaaaaatctaatgcgaagattttgaataaggttttgaaacacggtgaaaaatctagtgccttgtgtaacattgaagttgagcatca |
100 |
Q |
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| T |
21537236 |
ttttgaaacaccgtaaaaaatataatgcgaagattttgaataaggttttgaaacacggtgaaaaatctagtgccttgtgtaacattgaagttgagcatca |
21537335 |
T |
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| Q |
101 |
ggggtatgttccatctaaacttttgagcaagatgatcaattgtgctgtaaaacatgaggtggaaaaattcaaagttggcacctaccttcgtgataatgaa |
200 |
Q |
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| T |
21537336 |
ggggtatgttccatctaaacttttgagcaagatgatcaattgtgctgtaaaacatgaggtggaaaaattcaaagttggcacctaccttcgtgataaggaa |
21537435 |
T |
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| Q |
201 |
agtaa |
205 |
Q |
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||||| |
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| T |
21537436 |
agtaa |
21537440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 21521537 - 21521719
Alignment:
| Q |
29 |
gaagattttgaataaggttttgaaacacggtgaaaaatctagtgccttgtg------taacattgaagttgagcatcaggggtatgttccatctaaactt |
122 |
Q |
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| T |
21521537 |
gaagtttttgaataaggttttgaaacaccatgaaaaatctagtgcctcgtgcctacgtaatattgaagttgatcatcaggggtatgttccatcaaaactt |
21521636 |
T |
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| Q |
123 |
ttgagcaagatgatcaattgtgctgtaaaacatgaggtggaaaaattcaaagttggcacctaccttcgtgataatgaaagtaa |
205 |
Q |
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| T |
21521637 |
ttgagcaagatgagcaattgtgctgtaaatcataaggtggaaaaattcaaagttggcacctaccttcgtgataaggaaagtaa |
21521719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21537191 - 21537256
Alignment:
| Q |
1 |
ttttgaaacaccgtgaaaaatctaatgcgaagattttgaataaggttttgaaacacggtgaaaaat |
66 |
Q |
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| T |
21537191 |
ttttgaaacaccgtgaaaaatctagtgcgaagattttgaataaggttttgaaacaccgtaaaaaat |
21537256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 21537174 - 21537218
Alignment:
| Q |
29 |
gaagattttgaataaggttttgaaacacggtgaaaaatctagtgc |
73 |
Q |
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| T |
21537174 |
gaagtttttgaataaggttttgaaacaccgtgaaaaatctagtgc |
21537218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 20426788 - 20426639
Alignment:
| Q |
41 |
taaggttttgaaacacggtgaaaaatctagtgccttgtgtaacattgaagttgagcatcaggggtatgttccatctaaacttttgagcaagatgat-caa |
139 |
Q |
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|||||||||| ||||| ||||| |||||||||| |||||| ||||||||||| ||| | | | | |||| ||||| ||||||||| |||| ||| |
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| T |
20426788 |
taaggttttgcaacaccgtgaaggctctagtgcctagtgtaatattgaagttgatcatgaatgatgtattccccaaaaactgttgagcaagttgattcaa |
20426689 |
T |
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| Q |
140 |
ttgtgctgtaaaacatgaggtggaaaaattcaaagttggcacctaccttc |
189 |
Q |
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|| | |||| |||| | ||||||||||||||||||||||||||||||| |
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| T |
20426688 |
ttttaatgtatgacataacgtggaaaaattcaaagttggcacctaccttc |
20426639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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