View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_high_4 (Length: 484)
Name: NF5958_high_4
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_high_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 44949235 - 44949707
Alignment:
| Q |
1 |
aactccacccttgcttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949235 |
aactccacccttgcttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatct |
44949334 |
T |
|
| Q |
101 |
aaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949335 |
aaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtgg |
44949434 |
T |
|
| Q |
201 |
aaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44949435 |
aaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccgtatcaagcttcccatcactataaaaatgcccaccagtgat |
44949534 |
T |
|
| Q |
301 |
atcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgcc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949535 |
atcctctgaaggctcaagttctgctgccatgtagtgctttatatcttcgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgcc |
44949634 |
T |
|
| Q |
401 |
tttagggatttattcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcctctgt |
473 |
Q |
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| T |
44949635 |
tttagggatttattcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcctctgt |
44949707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 6 - 381
Target Start/End: Original strand, 6470089 - 6470464
Alignment:
| Q |
6 |
cacccttgcttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaac |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
6470089 |
cacccttgcttttgcatatgtaacaagttttgccaacaggaatagatgcaaaatccccatatccagtacttgtcatctgcattatctcatcatctaaaac |
6470188 |
T |
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| Q |
106 |
caaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaact |
205 |
Q |
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||||||||| |||||||| |||||||||| ||| ||||||| ||| |||||| | ||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
6470189 |
caaagtttgtaaaatctcttctatttgttctcccgtgacttgagttgtgaagaccccactccttttaacccactccaaacatccatcacatgtggaaact |
6470288 |
T |
|
| Q |
206 |
ttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgatatcct |
305 |
Q |
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| | || ||||||||| || |||| | ||||||||| ||||||||| || ||||||| |||| ||||| ||||||||||||||||| ||||||| |
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| T |
6470289 |
ctctccaatgaaatgcattgcaggcacgtttgctttagagcgtctataaaaaccgtatcaagactcccttcactgtaaaaatgcccaccagttatatcct |
6470388 |
T |
|
| Q |
306 |
ctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatact |
381 |
Q |
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|||||||||| ||||| | |||||||| ||||||| ||||||||| |||| ||||| ||||||||||||||| |
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| T |
6470389 |
tcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctttaccatact |
6470464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 88 - 289
Target Start/End: Original strand, 44943533 - 44943734
Alignment:
| Q |
88 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacat |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
44943533 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagaattgaagattccactctttttaatccactccaaacat |
44943632 |
T |
|
| Q |
188 |
ccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaat |
287 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| ||| || ||||||| |||||||||| |||||||| |
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| T |
44943633 |
ccattacatgtggaaactttctgcatgaaaatgcatttcaagtacacattctttagagtatctatcaaaaccgtatcaagtttcccatcaccataaaaat |
44943732 |
T |
|
| Q |
288 |
gc |
289 |
Q |
| |
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|| |
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| T |
44943733 |
gc |
44943734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 44943742 - 44943804
Alignment:
| Q |
337 |
ctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
399 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44943742 |
ctttatacctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
44943804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 381
Target Start/End: Complemental strand, 419595 - 419220
Alignment:
| Q |
6 |
cacccttgcttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaac |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
419595 |
cacccttgcttttgcatatgtaacaagttttgccaacgggaatagatgcaaaatccccatatccagtacttgtcatctgcatgatctcatcgtctaaaac |
419496 |
T |
|
| Q |
106 |
caaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaact |
205 |
Q |
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|||||||||||||||||| |||||||| | ||| ||||||| ||| |||||| | |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
419495 |
caaagtttgcaaaatctcttctatttggtctcccgtgacttgagttgtgaagaccccactctttttaacccactccaaacatccatcacatgtggaaact |
419396 |
T |
|
| Q |
206 |
ttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgatatcct |
305 |
Q |
| |
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| || | ||||||||| ||||||| ||||||||||||||||||||| || ||||||| |||| || || ||||||||||||||||| ||||||| |
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| T |
419395 |
ctctgtaatgaaatgcattgcaagcacgttttctttagagcatctataaaaaccgtatcaagactcccttcgctgtaaaaatgcccaccagttatatcct |
419296 |
T |
|
| Q |
306 |
ctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccatact |
381 |
Q |
| |
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|||||||||| ||||| | |||||||| ||||||| ||||||||| |||| ||||| ||||||||||||||| |
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| T |
419295 |
tcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctttaccatact |
419220 |
T |
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