View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_low_10 (Length: 322)
Name: NF5958_low_10
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_10 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 21537743 - 21537422
Alignment:
| Q |
1 |
cttgaatgttgatacataattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21537743 |
cttgaatgttgatacataattgttagactagaaagtatatcaccggatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaag |
21537644 |
T |
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| Q |
101 |
tactaagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaag |
200 |
Q |
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| T |
21537643 |
tactaagcttcttacattttaagaaaggcatagcataatctttgtcattagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaag |
21537544 |
T |
|
| Q |
201 |
atctatagtttctggaagctttacttcccatccatatgtataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagtgaaaaagtagg |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21537543 |
atctatagtttctggaagttttacttcccatccatatgtataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagg |
21537444 |
T |
|
| Q |
301 |
gtgttactttcattatcacgaa |
322 |
Q |
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|| |||||||| |||||||||| |
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| T |
21537443 |
gtattactttccttatcacgaa |
21537422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 322
Target Start/End: Complemental strand, 21522013 - 21521701
Alignment:
| Q |
10 |
tgatacataattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagct |
109 |
Q |
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|||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
21522013 |
tgatacatgattgttagactggaaaatgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgtcgatgactaaagtactaagct |
21521914 |
T |
|
| Q |
110 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
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| T |
21521913 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaatagtttgctaactctggaaggtctagagt |
21521814 |
T |
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| Q |
210 |
ttctggaagctttacttcccatccatatgtataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagtgaaaaagtagggtgttactt |
309 |
Q |
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||||||||| |||||||| ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |
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| T |
21521813 |
ttctggaagttttacttcacattcacatctataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagcatattactt |
21521714 |
T |
|
| Q |
310 |
tcattatcacgaa |
322 |
Q |
| |
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|| |||||||||| |
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| T |
21521713 |
tccttatcacgaa |
21521701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 20426330 - 20426534
Alignment:
| Q |
17 |
taattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagcttcttaca |
116 |
Q |
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|||| ||||| ||||||||| |||||||||||||| ||| ||||||||||||| ||| |||| ||| || | || ||||||||||| ||||||||| |
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| T |
20426330 |
taatagttaggctagaaagtctatcaccagatatacaaagaattttgtcatctctgattaatttgaaattctcaatgaataaagtactaaacttcttaca |
20426429 |
T |
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| Q |
117 |
ttttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagtttctgga |
216 |
Q |
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||||||||||||| ||||| || | ||| ||||| | |||| || || ||||| ||||| || ||| || ||||||| ||||||| |||||||||| || |
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| T |
20426430 |
ttttaagaaaggcttagcacaaccattgtcatcatctaaagaaattgaaacatttcttagacgacaacttactaactccggaagatatatagtttctaga |
20426529 |
T |
|
| Q |
217 |
agctt |
221 |
Q |
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||||| |
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| T |
20426530 |
agctt |
20426534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 20427630 - 20427552
Alignment:
| Q |
96 |
taaagtactaagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtctt |
174 |
Q |
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||||||| |||||||||||||||| ||||||||| ||||| || | |||| |||| ||||||||| |||||||| |||| |
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| T |
20427630 |
taaagtattaagcttcttacatttcaagaaaggcttagcacaaccattgctatcatccaaagtaattgtaacatttctt |
20427552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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