View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_low_12 (Length: 315)
Name: NF5958_low_12
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 32557255 - 32556966
Alignment:
| Q |
19 |
tattttgcttgagctctctaatgatctttttgcttgctatgatattctgcaactgaagaaacatacattagctgaaattgtagtttattttgatataata |
118 |
Q |
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| T |
32557255 |
tattttgcttgagctctctaatgatctttttgcttgctatgatattctgcaaatgaagaaacatacattagcggaaattgtagtttattttgatataata |
32557156 |
T |
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| Q |
119 |
gatagatgtaatgactcctgcagtatagtctaactgtagcttattgcagccccgatgtataaaagaatgaagttatttaaatccacccttatgttt-nnn |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32557155 |
gatagatgtaatgactcctgcagtatagtctaactgtagcttattgcagccccaatgtataaaagaatgaagttatttaaatccacccttatgtttaaaa |
32557056 |
T |
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| Q |
218 |
nnnntgtggcaaattatttgggattctctgagtgtgacaaatttgcttactcaggtgaaagccaagacagattgttagctagcctttgtt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
32557055 |
aaaatgtggcaaattatttgggattctctgagtgtgacaaatttgcttactcgggtgaaagccaatacagattgttagctagcctttgtt |
32556966 |
T |
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