View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_low_13 (Length: 292)
Name: NF5958_low_13
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 6954033 - 6954290
Alignment:
| Q |
22 |
tccccttaatgtaaaaatagttttcatctttcccttcaaagaaagcatagttttcttgtaactcgttacttcccaaatagttttcttcctgtttctcaat |
121 |
Q |
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| T |
6954033 |
tcccgttaatgtaaaaatagttttcatctttcccttcaaagaaagcatagttttcttgtaactcgttaattcccaaatagttttcttcctgtttctcaat |
6954132 |
T |
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| Q |
122 |
actttcgacatagttttcttctgcaagagaatcaaaagatttaagaagagatgttactgatatcggtgaaactattgtgtgagagagattttgatctttg |
221 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6954133 |
actttcgacagagttttcttctgcaagaaaatcaaaagatttaagaagagatgttactgatatcggtgaaactattgtgtgagagagattttgatctttg |
6954232 |
T |
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| Q |
222 |
agtatgaagataatataatatagaaaataaacgaattaatattctatgatgatgagaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6954233 |
agtatgaagataatataatatagaaaataaacgaattaatattctatgatgatgagaa |
6954290 |
T |
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