View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_low_16 (Length: 267)
Name: NF5958_low_16
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 29104343 - 29104591
Alignment:
| Q |
1 |
caagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccattcttagaaatctcagc |
100 |
Q |
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| T |
29104343 |
caagcaagcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatcttaaaagtaaaatagctccatccttagaaatctcagc |
29104442 |
T |
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| Q |
101 |
aaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatctta |
200 |
Q |
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| T |
29104443 |
aaaacaagcttctttga------------tggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatctta |
29104530 |
T |
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| Q |
201 |
accgcttctaaccaactgttgattttcatctcaagaacttcccagtccatcttattcatct |
261 |
Q |
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| T |
29104531 |
accgcctctaaccaactgttgattttcatctcaagaacttcccagtccatcttattcatct |
29104591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 29090082 - 29090326
Alignment:
| Q |
1 |
caagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccat-tcttagaaatctcag |
99 |
Q |
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||||||| || |||||||||||||| | ||||||||||||| ||||||| ||||||||||| || || | | ||||||||| |||| ||||| ||| |
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| T |
29090082 |
caagcaaacggaaaatcttctccggtgtccatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagtagctccatctctt-gaaatttcac |
29090180 |
T |
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| Q |
100 |
caaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatctt |
199 |
Q |
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|||||||||||||| |||| ||||||||||||||| ||||| ||||||||||| |||||||| | ||||| || |||||||||||||| |
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| T |
29090181 |
caaaacaagcttctctgat------------ggaattcgaagcgaaaattcgttcgcagaggtttctctctccagaaaagagtgttctcactgagatctt |
29090268 |
T |
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| Q |
200 |
aaccgcttctaaccaactgttgattttcatctcaagaacttcccagtccatcttattc |
257 |
Q |
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||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29090269 |
aactgcctctaaccaacagttgattttcatctcaagaacttcccagtccatcttattc |
29090326 |
T |
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