View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5958_low_18 (Length: 258)
Name: NF5958_low_18
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 19236857 - 19237079
Alignment:
| Q |
21 |
ggtcactaccaacagacaatttctcctccacagtttcttcctgtaaaaggagaaaaacacatttattaattgtgaagtaactaggaaaaccaccaaaaca |
120 |
Q |
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| T |
19236857 |
ggtcactaccaacagacaatttctcctccacagtttcttcctgtaaaaggagaaaaacacatttattaaatgtgaagtaactaggaaaaccaccaaaaca |
19236956 |
T |
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| Q |
121 |
tcaatgaaaggttactaatgaatgaaaaaccgacaataagaaatttacatttcttttctcacttcaaaattttttataaacnnnnnnntttgaactttat |
220 |
Q |
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| T |
19236957 |
tcaatgaaaggttactaatgaatgaaaaaccaacaataagaaatttacgtttcttttctcacttcaaaattttttataaa----aaaacttgaactttat |
19237052 |
T |
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| Q |
221 |
atccatgtcttcaaaattgaaattcat |
247 |
Q |
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||||||||||||||||||||||||||| |
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| T |
19237053 |
atccatgtcttcaaaattgaaattcat |
19237079 |
T |
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