View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5958_low_2 (Length: 505)

Name: NF5958_low_2
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5958_low_2
NF5958_low_2
[»] chr5 (42 HSPs)
chr5 (17-505)||(17224815-17225303)
chr5 (374-457)||(40515237-40515320)
chr5 (363-454)||(9707084-9707175)
chr5 (359-418)||(7313916-7313975)
chr5 (374-457)||(40515228-40515311)
chr5 (375-457)||(17225163-17225245)
chr5 (374-418)||(1098638-1098682)
chr5 (355-455)||(26045256-26045356)
chr5 (374-457)||(9707086-9707169)
chr5 (359-416)||(18261595-18261652)
chr5 (361-418)||(25792932-25792989)
chr5 (404-457)||(25792932-25792985)
chr5 (374-418)||(2673857-2673901)
chr5 (374-418)||(13654519-13654563)
chr5 (374-418)||(42247562-42247606)
chr5 (374-413)||(13356116-13356155)
chr5 (414-465)||(18261593-18261644)
chr5 (404-463)||(22227067-22227126)
chr5 (375-418)||(25713784-25713827)
chr5 (414-448)||(892561-892595)
chr5 (405-467)||(7613349-7613411)
chr5 (359-416)||(1098715-1098772)
chr5 (359-416)||(13391619-13391676)
chr5 (422-455)||(13654612-13654645)
chr5 (421-466)||(42364323-42364368)
chr5 (404-453)||(43506180-43506229)
chr5 (412-464)||(1098721-1098773)
chr5 (374-418)||(3100415-3100459)
chr5 (416-464)||(7313928-7313976)
chr5 (382-418)||(13356155-13356191)
chr5 (374-418)||(13391541-13391585)
chr5 (374-418)||(13654594-13654638)
chr5 (374-418)||(25358142-25358186)
chr5 (374-418)||(36864508-36864552)
chr5 (421-457)||(37944603-37944639)
chr5 (359-407)||(38978741-38978789)
chr5 (412-464)||(40100081-40100133)
chr5 (374-418)||(40100097-40100141)
chr5 (423-463)||(40100192-40100232)
chr5 (421-457)||(42013823-42013859)
chr5 (421-457)||(43447471-43447507)
chr5 (374-418)||(43506180-43506224)
[»] chr3 (21 HSPs)
chr3 (374-418)||(4190714-4190758)
chr3 (377-413)||(105462-105498)
chr3 (374-416)||(611669-611711)
chr3 (373-463)||(42912350-42912439)
chr3 (374-418)||(36566721-36566765)
chr3 (374-418)||(36571460-36571504)
chr3 (393-448)||(11041534-11041589)
chr3 (404-466)||(331884-331946)
chr3 (353-414)||(2544430-2544491)
chr3 (404-457)||(7882282-7882335)
chr3 (405-466)||(12708680-12708741)
chr3 (423-460)||(13900226-13900263)
chr3 (359-412)||(13900332-13900385)
chr3 (378-418)||(17005046-17005085)
chr3 (375-407)||(27302180-27302212)
chr3 (374-418)||(39836951-39836995)
chr3 (378-418)||(40326524-40326563)
chr3 (374-418)||(42787701-42787745)
chr3 (378-418)||(44544173-44544212)
chr3 (375-407)||(45113835-45113867)
chr3 (378-418)||(51486441-51486480)
[»] chr4 (44 HSPs)
chr4 (359-418)||(3094352-3094411)
chr4 (378-418)||(3740394-3740434)
chr4 (374-418)||(28815869-28815913)
chr4 (374-418)||(15659945-15659989)
chr4 (374-418)||(20215577-20215621)
chr4 (374-418)||(22020126-22020170)
chr4 (359-418)||(4386318-4386377)
chr4 (374-462)||(11145571-11145655)
chr4 (359-410)||(14061490-14061541)
chr4 (375-418)||(20814540-20814583)
chr4 (404-474)||(14061479-14061549)
chr4 (414-459)||(13689632-13689677)
chr4 (374-414)||(5535803-5535843)
chr4 (374-418)||(11796595-11796639)
chr4 (374-418)||(16667149-16667193)
chr4 (374-418)||(37255692-37255736)
chr4 (374-418)||(44171518-44171561)
chr4 (375-418)||(2401051-2401094)
chr4 (414-465)||(22235356-22235407)
chr4 (375-418)||(46518506-46518549)
chr4 (414-464)||(22020110-22020160)
chr4 (374-416)||(37255769-37255811)
chr4 (414-464)||(56257431-56257481)
chr4 (381-418)||(4386408-4386445)
chr4 (375-416)||(8347584-8347625)
chr4 (404-457)||(38381977-38382030)
chr4 (404-457)||(54713099-54713152)
chr4 (404-464)||(4386317-4386377)
chr4 (378-446)||(4511270-4511338)
chr4 (374-418)||(11796670-11796714)
chr4 (378-418)||(12596762-12596802)
chr4 (374-418)||(19934648-19934692)
chr4 (374-418)||(20215645-20215689)
chr4 (405-457)||(20788037-20788089)
chr4 (405-457)||(20788122-20788174)
chr4 (378-418)||(23511877-23511916)
chr4 (378-418)||(23511962-23512001)
chr4 (374-418)||(31262680-31262724)
chr4 (378-418)||(34166127-34166166)
chr4 (375-407)||(43141867-43141899)
chr4 (374-418)||(45828583-45828627)
chr4 (414-466)||(54164805-54164857)
chr4 (374-418)||(54164823-54164867)
chr4 (375-407)||(54864079-54864111)
[»] chr1 (45 HSPs)
chr1 (414-470)||(5431329-5431385)
chr1 (374-416)||(34768366-34768408)
chr1 (358-418)||(6079058-6079118)
chr1 (374-418)||(42660367-42660411)
chr1 (378-418)||(42915661-42915701)
chr1 (374-418)||(52923333-52923377)
chr1 (375-418)||(6340656-6340699)
chr1 (414-457)||(14214551-14214594)
chr1 (374-420)||(5431351-5431397)
chr1 (414-463)||(5431436-5431485)
chr1 (414-463)||(10256776-10256825)
chr1 (414-467)||(19175579-19175632)
chr1 (357-417)||(1602904-1602964)
chr1 (374-418)||(14214615-14214659)
chr1 (374-418)||(19175598-19175642)
chr1 (414-466)||(38834603-38834655)
chr1 (374-418)||(51022727-51022771)
chr1 (374-418)||(52112886-52112930)
chr1 (374-418)||(52112961-52113005)
chr1 (374-418)||(52923409-52923453)
chr1 (374-417)||(14214560-14214603)
chr1 (363-418)||(19175674-19175729)
chr1 (375-418)||(29043465-29043508)
chr1 (413-464)||(39515060-39515111)
chr1 (383-418)||(39940506-39940541)
chr1 (414-457)||(52923324-52923367)
chr1 (412-454)||(1409053-1409095)
chr1 (360-418)||(1409135-1409193)
chr1 (414-448)||(34597530-34597564)
chr1 (359-416)||(9675961-9676018)
chr1 (412-457)||(32796840-32796885)
chr1 (414-463)||(34768374-34768423)
chr1 (414-466)||(457668-457720)
chr1 (414-462)||(1409145-1409193)
chr1 (405-457)||(1602904-1602956)
chr1 (378-418)||(5431426-5431466)
chr1 (421-457)||(8258046-8258082)
chr1 (374-418)||(10256791-10256835)
chr1 (414-466)||(14214625-14214677)
chr1 (378-418)||(21852452-21852491)
chr1 (374-418)||(26158718-26158762)
chr1 (374-418)||(26172016-26172060)
chr1 (404-448)||(28038913-28038957)
chr1 (374-418)||(34597530-34597574)
chr1 (415-463)||(38758397-38758445)
[»] chr7 (26 HSPs)
chr7 (375-418)||(8169108-8169151)
chr7 (374-416)||(34840749-34840791)
chr7 (374-418)||(8169182-8169226)
chr7 (375-418)||(34840625-34840668)
chr7 (374-418)||(11602853-11602897)
chr7 (414-466)||(34840606-34840658)
chr7 (359-418)||(32599748-32599807)
chr7 (412-463)||(34478329-34478380)
chr7 (374-416)||(11602778-11602820)
chr7 (374-416)||(18654260-18654302)
chr7 (358-416)||(38940214-38940272)
chr7 (374-420)||(43813135-43813181)
chr7 (404-457)||(10095720-10095773)
chr7 (405-470)||(36547673-36547738)
chr7 (421-458)||(40417009-40417046)
chr7 (404-457)||(43103073-43103126)
chr7 (377-413)||(7104662-7104698)
chr7 (375-407)||(12806923-12806955)
chr7 (374-418)||(21099329-21099373)
chr7 (378-418)||(30005962-30006001)
chr7 (421-457)||(34703546-34703582)
chr7 (378-418)||(35160764-35160803)
chr7 (378-418)||(35160835-35160874)
chr7 (375-407)||(40198619-40198651)
chr7 (375-407)||(41487806-41487838)
chr7 (375-407)||(47484122-47484154)
[»] chr6 (11 HSPs)
chr6 (359-418)||(31632193-31632252)
chr6 (374-416)||(18491749-18491791)
chr6 (374-418)||(13463018-13463062)
chr6 (375-416)||(32124212-32124253)
chr6 (404-464)||(31996585-31996645)
chr6 (359-418)||(3203757-3203816)
chr6 (404-466)||(3203663-3203725)
chr6 (404-470)||(13463018-13463084)
chr6 (414-464)||(32124220-32124270)
chr6 (404-457)||(18097061-18097114)
chr6 (374-415)||(24110230-24110271)
[»] chr2 (16 HSPs)
chr2 (359-416)||(27964279-27964336)
chr2 (360-418)||(41824346-41824404)
chr2 (358-418)||(23143572-23143632)
chr2 (358-418)||(23555362-23555422)
chr2 (374-418)||(44274552-44274596)
chr2 (414-457)||(26229541-26229584)
chr2 (375-414)||(27306726-27306765)
chr2 (414-464)||(27964278-27964328)
chr2 (414-463)||(44274637-44274686)
chr2 (374-418)||(14952775-14952819)
chr2 (375-407)||(15239793-15239825)
chr2 (375-407)||(28143846-28143878)
chr2 (405-457)||(32316419-32316471)
chr2 (422-466)||(33407386-33407430)
chr2 (374-418)||(43542928-43542972)
chr2 (378-418)||(44274627-44274667)
[»] chr8 (19 HSPs)
chr8 (375-418)||(17800640-17800683)
chr8 (359-418)||(24418876-24418935)
chr8 (374-418)||(24820308-24820352)
chr8 (374-418)||(36308002-36308046)
chr8 (375-418)||(6260620-6260663)
chr8 (414-457)||(24820393-24820436)
chr8 (374-416)||(45145466-45145508)
chr8 (412-457)||(9056115-9056160)
chr8 (377-418)||(24418966-24419007)
chr8 (375-416)||(34604796-34604837)
chr8 (404-457)||(44319522-44319575)
chr8 (386-418)||(2552884-2552916)
chr8 (374-418)||(7428902-7428946)
chr8 (375-407)||(13831976-13832008)
chr8 (374-418)||(13841858-13841902)
chr8 (404-464)||(17986280-17986340)
chr8 (374-418)||(24820383-24820427)
chr8 (374-418)||(28882674-28882718)
chr8 (374-418)||(35781237-35781281)
[»] scaffold0223 (1 HSPs)
scaffold0223 (357-412)||(26669-26722)
[»] scaffold0294 (1 HSPs)
scaffold0294 (375-416)||(13000-13041)
[»] scaffold0148 (2 HSPs)
scaffold0148 (375-415)||(21134-21174)
scaffold0148 (374-418)||(21207-21251)
[»] scaffold0059 (1 HSPs)
scaffold0059 (405-457)||(4460-4512)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 17224815 - 17225303
Alignment:
Q  17 ataatgcacactatgcaatgaaagaacttaactactctataaataagaactttcctttgaccaaatcaaatctttcagtacatttctctctgatttgaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17224815 ataatgcacactatgcaatgaaagaacttaactactctataaataagaactttcctttgaccaaatcaaatctttcagtacatttctctctgatttgaga 17224914  T
Q  117 gttcaatatatttcatatgaaaaaagtatgtctgatattctcaaacttggagactgacatgttttggaaatattttttggatatgaaaaaagtcaaggca 216  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17224915 gttcaatatatttcatatgaaaaaaggatgtctgatattctcaaacttggagactgacatgttttggaaatattttttggatatgaaaaaagtcaaggca 17225014  T
Q  217 atgtctcttttatgagtgtctatggatcccatggaatgcatctattggataccctagtccaatggattaatggtgnnnnnnnattgatacttccctgtgt 316  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  17225015 atgtctcttttatgagtgtctatggatcccttggaatgcatctattggataccctagtccaatggattaatggtgtttttttattgatacttccctgtgt 17225114  T
Q  317 ttgattggactaacctagtccaagtgctctagacttaactactactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  17225115 ttgattggactaccctagtccaagtgctctagacttaactactgctccctccggtcgttattataagcaaaagttgactttttaggttcattcaataaat 17225214  T
Q  417 gaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatattatatttagctacttnnnnnnnggataattgagtacctc 505  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||       |||||||||||||||||    
T  17225215 gaagctaaaaagtgaatttttgcttataataacgaccggatggagtatattatatttagctacttaaaaaaaggataattgagtacctc 17225303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 374 - 457
Target Start/End: Original strand, 40515237 - 40515320
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  40515237 ctattataagtaaaagttgactttttagattcattcaataaatgaatctaaaaagtgaacttttgcttataatagtgaccggag 40515320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 454
Target Start/End: Original strand, 9707084 - 9707175
Alignment:
Q  363 ccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccg 454  Q
    |||||||||  ||||||||||||||| || ||||| ||||||||||||||||||||| ||||| |||  ||||||||||||||||| |||||    
T  9707084 ccctccagtcactattataagcaaaaatttactttctaggttcattcaataaatgaacctaaatagtagatttttgcttataatagtgaccg 9707175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 7313975 - 7313916
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  7313975 tactccctccggtcactattataagcaaaagttgactttttaggttcaatcaataaatga 7313916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 457
Target Start/End: Complemental strand, 40515311 - 40515228
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||||||||||||||| ||||||||| |||||| | | |||||| ||||||||| || |||| |||||||||| ||||||||    
T  40515311 ctattataagcaaaagttcactttttagattcatttattgaatgaatctaaaaagtcaacttttacttataatagtgaccggag 40515228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 457
Target Start/End: Complemental strand, 17225245 - 17225163
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||||||||||| || ||||||||| |||||| | | |||||| ||||||||| || |||||||||||||| |||||||||    
T  17225245 tattataagcaaaaattcactttttagcttcatttattgaatgaacctaaaaagtcaacttttgcttataataacgaccggag 17225163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 1098638 - 1098682
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  1098638 ctattataagtaaaagttgactttttagattcattcaataaatga 1098682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 455
Target Start/End: Original strand, 26045256 - 26045356
Alignment:
Q  355 ctactactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccg 454  Q
    ||||||| |||||| ||  ||||||||||||||| || |  |||||| |||||||||| |||||| |||||| ||  ||||||| ||||||||| |||||    
T  26045256 ctactacaccctccggttactattataagcaaaaatttatattttagattcattcaattaatgaatctaaaatgttgatttttgtttataatagtgaccg 26045355  T
Q  455 g 455  Q
    |    
T  26045356 g 26045356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 457
Target Start/End: Complemental strand, 9707169 - 9707086
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    ||||||||||||||| |  ||| |||||||||||| | | |||||| ||| ||||| |||||||||||||||||| ||| ||||    
T  9707169 ctattataagcaaaaatctactatttaggttcatttattgaatgaacctagaaagtaaatttttgcttataatagtgactggag 9707086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 18261595 - 18261652
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||| ||  |||||||||||||||||| ||||| ||| ||||||||||||||    
T  18261595 tactccctccggtcactattataagcaaaagttcactttatagattcattcaataaat 18261652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 25792989 - 25792932
Alignment:
Q  361 ctccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||| ||  ||||||||||||||| || |||||||||||||||||| |||||||    
T  25792989 ctccctccggtcactattataagcaaaaatttactttttaggttcattcattaaatga 25792932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 457
Target Start/End: Original strand, 25792932 - 25792985
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    ||||| ||| |||||| ||||||||| |||||||||||||||||| ||||||||    
T  25792932 tcatttaatgaatgaacctaaaaagtaaatttttgcttataatagtgaccggag 25792985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 2673857 - 2673901
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||    
T  2673857 ctattataagcaaattttgactttttaggtacattcaataaatga 2673901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 13654519 - 13654563
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| |||  |||||||||||||||||||||||||||||    
T  13654519 ctattataagtaaatattgactttttaggttcattcaataaatga 13654563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 42247562 - 42247606
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||    
T  42247562 ctattataagcaaattttgactttttatgttcattcaataaatga 42247606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 413
Target Start/End: Original strand, 13356116 - 13356155
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaata 413  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  13356116 ctattataagcaaaattttactttttaggttcattcaata 13356155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 465
Target Start/End: Complemental strand, 18261644 - 18261593
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtata 465  Q
    |||||| ||| |||||||| ||||||||||||||| |||||||| |||||||    
T  18261644 aatgaatctataaagtgaacttttgcttataatagtgaccggagggagtata 18261593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 463
Target Start/End: Original strand, 22227067 - 22227126
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagta 463  Q
    ||||| ||| |||||| |||||| ||  ||||||||||||||||| ||||||||||||||    
T  22227067 tcatttaatgaatgaacctaaaacgttgatttttgcttataatagtgaccggagagagta 22227126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Complemental strand, 25713827 - 25713784
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||| |||||||||| ||||||| ||||||||||||||||    
T  25713827 tattataaacaaaagttgattttttagattcattcaataaatga 25713784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 448
Target Start/End: Complemental strand, 892595 - 892561
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatag 448  Q
    |||||| ||||||||||||||||||||||||||||    
T  892595 aatgaatctaaaaagtgaatttttgcttataatag 892561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 467
Target Start/End: Complemental strand, 7613411 - 7613349
Alignment:
Q  405 cattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatatt 467  Q
    |||| ||| ||||||  ||||||||  ||||||||||||||||| ||||||||| ||||||||    
T  7613411 catttaatgaatgaacttaaaaagttgatttttgcttataatagtgaccggagaaagtatatt 7613349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 1098772 - 1098715
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||| ||  |||||||||||||||||| | ||||||| |||||| |||||||    
T  1098772 tactccctccggtcactattataagcaaaagtttattttttagattcatttaataaat 1098715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 13391676 - 13391619
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||| ||  || |||||||||||| |  ||||||||||||||||||||||||    
T  13391676 tactccctcctgtcactgttataagcaaaaatcaactttttaggttcattcaataaat 13391619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 455
Target Start/End: Original strand, 13654612 - 13654645
Alignment:
Q  422 taaaaagtgaatttttgcttataatagcgaccgg 455  Q
    ||||||||||||||||||||||||||| ||||||    
T  13654612 taaaaagtgaatttttgcttataatagtgaccgg 13654645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 466
Target Start/End: Original strand, 42364323 - 42364368
Alignment:
Q  421 ctaaaaagtgaatttttgcttataatagcgaccggagagagtatat 466  Q
    |||||||||||| ||||||||||||||| |||||||  ||||||||    
T  42364323 ctaaaaagtgaagttttgcttataatagtgaccggaaggagtatat 42364368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 43506180 - 43506229
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgacc 453  Q
    ||||| ||| |||||| |||||||||||| ||||||||||||||| ||||    
T  43506180 tcatttaatgaatgaatctaaaaagtgaaattttgcttataatagtgacc 43506229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 464
Target Start/End: Original strand, 1098721 - 1098773
Alignment:
Q  412 taaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    |||||||| ||||||| | || ||||||||||||||| |||||||| ||||||    
T  1098721 taaatgaatctaaaaaataaacttttgcttataatagtgaccggagggagtat 1098773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 3100415 - 3100459
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || || |||||| ||||||||||||||||    
T  3100415 ctattataagcaaaaattaacattttagattcattcaataaatga 3100459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 464
Target Start/End: Original strand, 7313928 - 7313976
Alignment:
Q  416 tgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    |||| ||||||||| || ||||||||||||||| |||||||| ||||||    
T  7313928 tgaacctaaaaagtcaacttttgcttataatagtgaccggagggagtat 7313976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 13356155 - 13356191
Alignment:
Q  382 agcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||| || ||||||||||||||||||||||||||    
T  13356155 agcaaaattttactttttaggttcattcaataaatga 13356191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 13391541 - 13391585
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| ||||||  ||||||||| ||||||||||||||||    
T  13391541 ctattataagtaaaagtcaactttttagattcattcaataaatga 13391585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 13654638 - 13654594
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || ||||||||  ||||||||||||||||    
T  13654638 ctattataagcaaaaattcactttttaaattcattcaataaatga 13654594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 25358186 - 25358142
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| ||||||| || ||||| |||||||||||||||||    
T  25358186 ctattataagtaaaagttcacattttatgttcattcaataaatga 25358142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 36864552 - 36864508
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||  ||||||| ||||||||| ||||||||||||||||    
T  36864552 ctattataaataaaagttcactttttagattcattcaataaatga 36864508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 37944639 - 37944603
Alignment:
Q  421 ctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  37944639 ctaaaaagtgaatttttgcttatattagtgaccggag 37944603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 38978741 - 38978789
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcat 407  Q
    |||||||||||||   ||||||||| ||||||||||||||||| |||||    
T  38978741 tactccctccagtccttattataagaaaaagttgactttttagattcat 38978789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 464
Target Start/End: Complemental strand, 40100133 - 40100081
Alignment:
Q  412 taaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    ||||||||  |||||||| |||||||||||||||||| || ||||| ||||||    
T  40100133 taaatgaatttaaaaagtcaatttttgcttataatagtgaacggagggagtat 40100081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 40100097 - 40100141
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| |||||||||||  |||||| |||||||||    
T  40100097 ctattataagcaaaaattgactttttaaattcatttaataaatga 40100141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 463
Target Start/End: Original strand, 40100192 - 40100232
Alignment:
Q  423 aaaaagtgaatttttgcttataatagcgaccggagagagta 463  Q
    ||||| |||||||||||||||||||| |||||||| |||||    
T  40100192 aaaaaatgaatttttgcttataatagtgaccggagggagta 40100232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 42013859 - 42013823
Alignment:
Q  421 ctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  42013859 ctaaaaagtgaatttttgcttatattagtgaccggag 42013823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 43447471 - 43447507
Alignment:
Q  421 ctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  43447471 ctaaaaagtgaatttttgcttatattagtgaccggag 43447507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 43506224 - 43506180
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || ||||||||| |||||||| |||||||    
T  43506224 ctattataagcaaaatttcactttttagattcattcattaaatga 43506180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 4190758 - 4190714
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4190758 ctattataagcaaaagttgactttttaggttcattcaataaatga 4190714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 105498 - 105462
Alignment:
Q  377 ttataagcaaaagttgactttttaggttcattcaata 413  Q
    |||||||||||||||||||||||||||||||||||||    
T  105498 ttataagcaaaagttgactttttaggttcattcaata 105462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 611711 - 611669
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  611711 ctattataagcaaaagttgactttttaggttaattcattaaat 611669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 463
Target Start/End: Original strand, 42912350 - 42912439
Alignment:
Q  373 gctattataagcaaaagttgactttttaggttcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagta 463  Q
    |||||||||||||||| || ||||||||| | |||| ||| | | ||  ||||||||||| ||||||||||||||| || |||||||||||    
T  42912350 gctattataagcaaaacttcactttttagatacatt-aattattcaatataaaaagtgaagttttgcttataatagtgatcggagagagta 42912439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 36566765 - 36566721
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||    
T  36566765 ctattataagcaaaagttttctttttagattcattcaataaatga 36566721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 36571504 - 36571460
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| |||||||||||||||| ||||||||| |||||||    
T  36571504 ctattataagtaaaagttgactttttaagttcattcattaaatga 36571460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 11041589 - 11041534
Alignment:
Q  393 actttttaggttcattcaataaatgaagctaaaaagtgaatttttgcttataatag 448  Q
    ||||||||  |||||| |||||||||| ||||||||||| | ||||||||||||||    
T  11041589 actttttatattcattgaataaatgaacctaaaaagtgattgtttgcttataatag 11041534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 466
Target Start/End: Original strand, 331884 - 331946
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatat 466  Q
    ||||| ||| |||||| |||||| || |||||||||||||||||| |||||||| | ||||||    
T  331884 tcatttaatgaatgaatctaaaatgttaatttttgcttataatagtgaccggagggtgtatat 331946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 2544430 - 2544491
Alignment:
Q  353 aactactactccctccagtagctattataagcaaaagttgactttttaggttcattcaataa 414  Q
    |||||||||||||||| ||   ||||||||| || | ||||||||||||||||||| |||||    
T  2544430 aactactactccctccggtccttattataagaaacaattgactttttaggttcattgaataa 2544491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 7882335 - 7882282
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    ||||| ||| |||||| |||||| || |||||||||||||||||| ||||||||    
T  7882335 tcatttaattaatgaatctaaaatgttaatttttgcttataatagtgaccggag 7882282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 466
Target Start/End: Complemental strand, 12708741 - 12708680
Alignment:
Q  405 cattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatat 466  Q
    |||| ||| |||||| ||| ||| |||||||||||||||||||| |||||||| | ||||||    
T  12708741 catttaatgaatgaacctagaaaatgaatttttgcttataatagtgaccggagggtgtatat 12708680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 460
Target Start/End: Complemental strand, 13900263 - 13900226
Alignment:
Q  423 aaaaagtgaatttttgcttataatagcgaccggagaga 460  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  13900263 aaaaagtgaatttttgcttataatagtgaccgaagaga 13900226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 13900385 - 13900332
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaat 412  Q
    |||||||||| ||  || |||||||||||||| || ||||||||||||||||||    
T  13900385 tactccctccggtcacttttataagcaaaagtagaatttttaggttcattcaat 13900332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 17005085 - 17005046
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  17005085 tataagcaaaa-ttgactttttaggttcattcaattaatga 17005046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 27302212 - 27302180
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  27302212 tattataagaaaaagttgactttttaggttcat 27302180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 39836995 - 39836951
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||  ||||||| ||||||||| ||||||||||||||||    
T  39836995 ctattataaataaaagtttactttttagattcattcaataaatga 39836951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 40326563 - 40326524
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  40326563 tataagcaaaa-ttgactttttaggttcattcaattaatga 40326524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 42787745 - 42787701
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||| ||||| || | ||||||||||||||||||||||||    
T  42787745 ctattataaacaaaaattcattttttaggttcattcaataaatga 42787701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 44544173 - 44544212
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  44544173 tataagcaaaa-ttgactttttaggttcattcaattaatga 44544212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 45113867 - 45113835
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  45113867 tattataagaaaaagttgactttttaggttcat 45113835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 51486441 - 51486480
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  51486441 tataagcaaaa-ttgactttttaggttcattcaattaatga 51486480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 3094411 - 3094352
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  3094411 tactccctccggtcactattataaccaaaagttgactttttaggttcattcaataaatga 3094352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 3740434 - 3740394
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3740434 tataagcaaaagttgactttttaggttcattcaataaatga 3740394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 28815913 - 28815869
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  28815913 ctattataagcaaaagttgactttttaggttcatttaataaatga 28815869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 15659945 - 15659989
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||    
T  15659945 ctattacaagcaaaagttcactttttaggttcattcaataaatga 15659989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 20215577 - 20215621
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  20215577 ctattataagcaaaaattgacattttaggttcattcaataaatga 20215621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 22020126 - 22020170
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||    
T  22020126 ctattataagcaaaagttcactttttagattcattcaataaatga 22020170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 4386318 - 4386377
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||  |||||||||||||||||||||||||||| || ||| | |||||||    
T  4386318 tactccctccagtcactattataagcaaaagttgactttttagattaatttattaaatga 4386377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 462
Target Start/End: Complemental strand, 11145655 - 11145571
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagt 462  Q
    ||||||||||||||| ||||||||||| ||| |||||||||||     |||||||||||||  |||||||||||| || ||||| ||||    
T  11145655 ctattataagcaaaatttgactttttaagttaattcaataaat----ataaaaagtgaattgatgcttataatagtgatcggagggagt 11145571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 14061490 - 14061541
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattca 410  Q
    |||||| | |||| ||||||||||||||||||| ||||||||||||||||||    
T  14061490 tactccattcagtcgctattataagcaaaagttaactttttaggttcattca 14061541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 20814540 - 20814583
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  20814540 tattataagcaaattttgactttttaggttcattcaataaatga 20814583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 14061549 - 14061479
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatattatattta 474  Q
    ||||||||| |||||| ||||||||| || ||||||||||||||||||| | |  |||||||| |||||||    
T  14061549 tcattcaatgaatgaacctaaaaagttaacttttgcttataatagcgactgaatggagtatatgatattta 14061479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 13689632 - 13689677
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagag 459  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||    
T  13689632 aatgaatctaaaaagtgaatttttgcttatattagtgaccggagag 13689677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 5535843 - 5535803
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataa 414  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  5535843 ctattataagcaaaaattgacttgttaggttcattcaataa 5535803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 11796595 - 11796639
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||||||||||| | |||||||||| |||||    
T  11796595 ctattataagcaaaagttgactttttcgattcattcaatgaatga 11796639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 16667193 - 16667149
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||    
T  16667193 ctattataagtaaaagttgacattttacgttcattcaataaatga 16667149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 37255692 - 37255736
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||    
T  37255692 ctattataagcaaaagttggttttttagattcattcaataaatga 37255736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 44171561 - 44171518
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||||| |||||||||||||||| |||||||    
T  44171561 ctattataagcaaaagttga-tttttaggttcattcattaaatga 44171518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 2401051 - 2401094
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||    
T  2401051 tattataagcaaaagttaactttttaaattcattcaataaatga 2401094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 465
Target Start/End: Original strand, 22235356 - 22235407
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtata 465  Q
    |||||| |||||| |||| |||||||||||||||| |||||||| |||||||    
T  22235356 aatgaatctaaaatgtgattttttgcttataatagtgaccggagggagtata 22235407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Complemental strand, 46518549 - 46518506
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||| || |||||||||||| |||||||||||||    
T  46518549 tattataagcaaaaattaactttttaggtttattcaataaatga 46518506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 22020160 - 22020110
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    |||||| |||||||||||| ||||||||||||||| |||| ||| ||||||    
T  22020160 aatgaatctaaaaagtgaacttttgcttataatagtgaccagagggagtat 22020110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 37255811 - 37255769
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||||||||||| ||||||||  ||||||||||||||    
T  37255811 ctattataagcaaaagttcactttttaaattcattcaataaat 37255769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 56257431 - 56257481
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    |||||| ||||||||| | ||||| |||||||||| |||||||||||||||    
T  56257431 aatgaatctaaaaagtaactttttacttataatagtgaccggagagagtat 56257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 4386445 - 4386408
Alignment:
Q  381 aagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  4386445 aagcaaaagtttactttttagattcattcaataaatga 4386408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 8347625 - 8347584
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    ||||||||| |||||||||||||||||||||||  |||||||    
T  8347625 tattataagaaaaagttgactttttaggttcatagaataaat 8347584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 38382030 - 38381977
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    ||||| ||| |||||| |||||| || |||||||||||||||||| ||||||||    
T  38382030 tcatttaatcaatgaatctaaaatgtaaatttttgcttataatagtgaccggag 38381977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 54713152 - 54713099
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    ||||| ||| |||||| |||||| || |||||||||||||||||| ||||||||    
T  54713152 tcattaaatgaatgaatctaaaatgtaaatttttgcttataatagtgaccggag 54713099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 464
Target Start/End: Complemental strand, 4386377 - 4386317
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    ||||| ||||||| || ||||||||| || ||||||||||||||| ||| |||| ||||||    
T  4386377 tcatttaataaattaatctaaaaagtcaacttttgcttataatagtgactggagggagtat 4386317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 446
Target Start/End: Original strand, 4511270 - 4511338
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatgaagctaaaaagtgaatttttgcttataat 446  Q
    ||||||||||| || |||||| || ||  ||||||||||||| ||||||| | |||||||||| |||||    
T  4511270 tataagcaaaaattcacttttaagatttgttcaataaatgaacctaaaaaataaatttttgctaataat 4511338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 11796714 - 11796670
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || ||||||||| || |||||||||||||    
T  11796714 ctattataagcaaaaattcactttttagatttattcaataaatga 11796670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 12596802 - 12596762
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||| ||||| || ||||||||||||||||||||||||||    
T  12596802 tataaacaaaaatttactttttaggttcattcaataaatga 12596762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 19934648 - 19934692
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| |  ||||||||| ||||||||||||||||    
T  19934648 ctattataagcaaaattccactttttagattcattcaataaatga 19934692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 20215689 - 20215645
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||| ||||||||||||||  |||||| ||||||||||||||||    
T  20215689 ctattttaagcaaaagttgatattttagattcattcaataaatga 20215645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 20788089 - 20788037
Alignment:
Q  405 cattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||| ||| |||||| ||||||  |||||||||||||||||||| ||||||||    
T  20788089 catttaatgaatgaacctaaaatatgaatttttgcttataatagtgaccggag 20788037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 20788122 - 20788174
Alignment:
Q  405 cattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||| ||| |||||| ||| ||| |||||||||||||||||||| ||||||||    
T  20788122 catttaatgaatgaacctagaaaatgaatttttgcttataatagtgaccggag 20788174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 23511877 - 23511916
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  23511877 tataagcaaaa-ttgactttttaggttcattcaattaatga 23511916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 23512001 - 23511962
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  23512001 tataagcaaaa-ttgactttttaggttcattcaattaatga 23511962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 31262724 - 31262680
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| ||||| |||||| ||||||| ||||||||    
T  31262724 ctattataagcaaaatttgacattttagattcattcgataaatga 31262680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 34166127 - 34166166
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  34166127 tataagcaaaa-ttgactttttaggttcattcaattaatga 34166166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 43141899 - 43141867
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  43141899 tattataagaaaaagttgactttttaggttcat 43141867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 45828627 - 45828583
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| ||||||||| |||||| | |||||||||||||||    
T  45828627 ctattataagtaaaagttgattttttatggtcattcaataaatga 45828583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 466
Target Start/End: Complemental strand, 54164857 - 54164805
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatat 466  Q
    |||||| |||||||||| | ||||||||||||||| |||||||| | ||||||    
T  54164857 aatgaatctaaaaagtggaattttgcttataatagtgaccggagggtgtatat 54164805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 54164823 - 54164867
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| |  ||||||||| ||||||||||||||||    
T  54164823 ctattataagcaaaattccactttttagattcattcaataaatga 54164867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 54864079 - 54864111
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  54864079 tattataagaaaaagttgactttttaggttcat 54864111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 470
Target Start/End: Complemental strand, 5431385 - 5431329
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatattata 470  Q
    |||||| |||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  5431385 aatgaatctaaaaagtgaatttttgcttataatagtgaccggagtaagtatattata 5431329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 34768408 - 34768366
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  34768408 ctattataagcaaaagttgactttttaggttcattcaacaaat 34768366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 6079058 - 6079118
Alignment:
Q  358 ctactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||   |||| ||||||||||||||||||||||||| ||| |||||||||    
T  6079058 ctactccctccagtcattattgtaagcaaaagttgactttttaggtttatttaataaatga 6079118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 42660367 - 42660411
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||    
T  42660367 ctattataagcaaaagttgattttttagattcattcaataaatga 42660411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 42915661 - 42915701
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  42915661 tataagcaaaagttgattttttaggttcattcaataaatga 42915701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 52923333 - 52923377
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
T  52923333 ctattataagcaaaatttcactttttaggttcattcaataaatga 52923377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 418
Target Start/End: Complemental strand, 6340699 - 6340656
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  6340699 tattataagcaaaaattaactttttaggttcattcaataaatga 6340656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 457
Target Start/End: Complemental strand, 14214594 - 14214551
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  14214594 aatgaacctaaaaagtgaatttttgcttataatagtgaccggag 14214551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 5431351 - 5431397
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatgaag 420  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||    
T  5431351 ctattataagcaaaaattcactttttagattcattcaataaatgaag 5431397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 5431436 - 5431485
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagta 463  Q
    |||||| ||||||||| |||||||||||||| ||| ||||||||||||||    
T  5431436 aatgaatctaaaaagttaatttttgcttatattagtgaccggagagagta 5431485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 463
Target Start/End: Complemental strand, 10256825 - 10256776
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagta 463  Q
    |||||| ||||||||||||||||| |||||||||| || |||||||||||    
T  10256825 aatgaatctaaaaagtgaattttttcttataatagtgatcggagagagta 10256776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 467
Target Start/End: Complemental strand, 19175632 - 19175579
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatatt 467  Q
    |||||| |||||||||||| |||| |||||||||| |||||||||| |||||||    
T  19175632 aatgaacctaaaaagtgaaattttacttataatagtgaccggagagtgtatatt 19175579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 1602964 - 1602904
Alignment:
Q  357 actactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatg 417  Q
    ||||| |||||||||  ||||||||||||||| || | |||||||||||||||| ||||||    
T  1602964 actacaccctccagtcactattataagcaaaaattcattttttaggttcattcattaaatg 1602904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 14214659 - 14214615
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  14214659 ctattataagcaaaaacttactttttaggttcattcaataaatga 14214615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 19175598 - 19175642
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| |||| || ||||||||||||||||||||||||||    
T  19175598 ctattataagtaaaatttcactttttaggttcattcaataaatga 19175642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 466
Target Start/End: Complemental strand, 38834655 - 38834603
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatat 466  Q
    |||||| ||||||| | |||||||||||||||||| |||||||| ||||||||    
T  38834655 aatgaatctaaaaaataaatttttgcttataatagtgaccggagggagtatat 38834603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 51022727 - 51022771
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||    
T  51022727 ctattataagcaaaagttgatattttagattcattcaataaatga 51022771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 52112886 - 52112930
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||    
T  52112886 ctattataagcaaaagttcactttttatattcattcaataaatga 52112930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 52113005 - 52112961
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| |||||||||||||||||||||||  |||||||||    
T  52113005 ctattataagtaaaagttgactttttaggttcatctaataaatga 52112961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 52923453 - 52923409
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||    
T  52923453 ctattataagcaaaaatctactttttaggttcattcaataaatga 52923409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 14214560 - 14214603
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatg 417  Q
    ||||||||||||||| || |||||||||||||||||||| ||||    
T  14214560 ctattataagcaaaaattcactttttaggttcattcaattaatg 14214603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 19175729 - 19175674
Alignment:
Q  363 ccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||  ||||||||||||||| |  ||||||||| ||||||||||||||||    
T  19175729 ccctccagtcactattataagcaaaaatctactttttagattcattcaataaatga 19175674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 29043465 - 29043508
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  29043465 tattataagcaaaaatcaactttttaggttcattcaataaatga 29043508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 464
Target Start/End: Original strand, 39515060 - 39515111
Alignment:
Q  413 aaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    ||||||| || ||||||||||||||||||||| ||| |||||||| ||||||    
T  39515060 aaatgaatctgaaaagtgaatttttgcttatattagtgaccggagggagtat 39515111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 39940506 - 39940541
Alignment:
Q  383 gcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  39940506 gcaaaagttgactttttaggttcatttaataaatga 39940541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Complemental strand, 52923367 - 52923324
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||| |||||||||||| ||||||||||||||| ||||||||    
T  52923367 aatgaacctaaaaagtgaaattttgcttataatagtgaccggag 52923324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 454
Target Start/End: Complemental strand, 1409095 - 1409053
Alignment:
Q  412 taaatgaagctaaaaagtgaatttttgcttataatagcgaccg 454  Q
    |||||||| |||||||||||| ||||||||||||||| |||||    
T  1409095 taaatgaatctaaaaagtgaacttttgcttataatagtgaccg 1409053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 1409193 - 1409135
Alignment:
Q  360 actccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||| ||  ||||||||||||||| ||  |||||||| ||||||||||||||||    
T  1409193 actccctccggtcactattataagcaaaaattatctttttagattcattcaataaatga 1409135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 448
Target Start/End: Complemental strand, 34597564 - 34597530
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatag 448  Q
    |||||| ||||||||||||||||||||||||||||    
T  34597564 aatgaatctaaaaagtgaatttttgcttataatag 34597530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 9675961 - 9676018
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||| ||  |||||||||| |||| || |||||||||||||||| |||||||    
T  9675961 tactccctccggtcactattataagtaaaaattaactttttaggttcatttaataaat 9676018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 32796840 - 32796885
Alignment:
Q  412 taaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||||| |||||||||||||||||| ||||||||| || |||||    
T  32796840 taaatgaatctaaaaagtgaatttttgtttataatagtgatcggag 32796885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 34768374 - 34768423
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagta 463  Q
    |||||| ||||||||| || ||||||||||||||| ||||||||| ||||    
T  34768374 aatgaacctaaaaagtcaacttttgcttataatagtgaccggagaaagta 34768423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 466
Target Start/End: Original strand, 457668 - 457720
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatat 466  Q
    |||||| |||||||||| ||||||||||||||  | |||||||| ||||||||    
T  457668 aatgaacctaaaaagtgcatttttgcttataaatgtgaccggagggagtatat 457720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 462
Target Start/End: Original strand, 1409145 - 1409193
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagt 462  Q
    |||||| ||||||||  |||||||||||||||||| |||||||| ||||    
T  1409145 aatgaatctaaaaagataatttttgcttataatagtgaccggagggagt 1409193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 1602904 - 1602956
Alignment:
Q  405 cattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||| ||| |||||| ||||||| |||||||||||||||||||| ||| ||||    
T  1602904 catttaatgaatgaacctaaaaaatgaatttttgcttataatagtgactggag 1602956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 5431466 - 5431426
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| || ||||||||| ||||||||||||||||    
T  5431466 tataagcaaaaattaactttttagattcattcaataaatga 5431426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 8258046 - 8258082
Alignment:
Q  421 ctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  8258046 ctaaaaagtgaatttttgcttatattagtgaccggag 8258082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 10256791 - 10256835
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| |||| || ||||||||| ||||||||||||||||    
T  10256791 ctattataagaaaaaattcactttttagattcattcaataaatga 10256835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 466
Target Start/End: Original strand, 14214625 - 14214677
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatat 466  Q
    |||||| ||||||||| | |||||||||||||||| |||||||| | ||||||    
T  14214625 aatgaacctaaaaagtaagtttttgcttataatagtgaccggagggtgtatat 14214677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 21852452 - 21852491
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  21852452 tataagcaaaa-ttgactttttaggttcattcaattaatga 21852491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 26158718 - 26158762
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || |||||||| |||||||||| ||||||    
T  26158718 ctattataagcaaaaattaactttttaagttcattcaacaaatga 26158762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 26172016 - 26172060
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || |||||||| |||||||||| ||||||    
T  26172016 ctattataagcaaaaattaactttttaagttcattcaacaaatga 26172060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 448
Target Start/End: Original strand, 28038913 - 28038957
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatag 448  Q
    ||||| |||||||||| |||||||||  |||||||||||||||||    
T  28038913 tcatttaataaatgaatctaaaaagttgatttttgcttataatag 28038957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 34597530 - 34597574
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || ||||||||| ||||||||| ||||||    
T  34597530 ctattataagcaaaaattcactttttagattcattcaacaaatga 34597574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 38758397 - 38758445
Alignment:
Q  415 atgaagctaaaaagtgaatttttgcttataatagcgaccggagagagta 463  Q
    ||||| ||||||||||  |||||||||||||||| |||||||| |||||    
T  38758397 atgaacctaaaaagtgtttttttgcttataatagtgaccggagggagta 38758445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 8169108 - 8169151
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  8169108 tattataagcaaaagttggctttttaggttcattcaataaatga 8169151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 34840791 - 34840749
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  34840791 ctattataagcaaaagttgacattttaggttcattcaataaat 34840749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 8169226 - 8169182
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||    
T  8169226 ctattataagcaaaagttaactttttagattcattcaataaatga 8169182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 34840625 - 34840668
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  34840625 tattataagcaaaagttcactttttagattcattcaataaatga 34840668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 11602897 - 11602853
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||||    
T  11602897 ctattataaacaaaagttcactttttagattcattcaataaatga 11602853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 466
Target Start/End: Complemental strand, 34840658 - 34840606
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatat 466  Q
    |||||| |||||||||||| ||||||||||||||  |||||||| ||||||||    
T  34840658 aatgaatctaaaaagtgaacttttgcttataataatgaccggagggagtatat 34840606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 32599807 - 32599748
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| ||  || ||||||||||||||||| || ||||||||||||| |||||||    
T  32599807 tactccctcctgtcactgttataagcaaaagttgatttgttaggttcattcattaaatga 32599748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 463
Target Start/End: Original strand, 34478329 - 34478380
Alignment:
Q  412 taaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagta 463  Q
    |||||||| ||||||| | |||||||||||||||||| ||||||| ||||||    
T  34478329 taaatgaatctaaaaaattaatttttgcttataatagtgaccggatagagta 34478380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 11602778 - 11602820
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||| ||||||||| |||||||||||||||| |||||    
T  11602778 ctattataagtaaaagttgattttttaggttcattcattaaat 11602820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 18654260 - 18654302
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||||||||||| | ||||||||||| ||||||||||    
T  18654260 ctattataagcaaaagttcattttttaggttctttcaataaat 18654302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 38940214 - 38940272
Alignment:
Q  358 ctactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    ||||||||||| ||   |||||||||||||| ||||| |||||| ||||||||||||||    
T  38940214 ctactccctccggtcattattataagcaaaaattgacattttagattcattcaataaat 38940272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 43813135 - 43813181
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatgaag 420  Q
    ||||||||||||||| || | ||||||| ||||||||||||||||||    
T  43813135 ctattataagcaaaaatttaatttttagattcattcaataaatgaag 43813181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 10095773 - 10095720
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    ||||| ||| |||||| |||||| || |||||||||||||||||| ||||||||    
T  10095773 tcatttaatgaatgaatctaaaatgttaatttttgcttataatagtgaccggag 10095720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 36547673 - 36547738
Alignment:
Q  405 cattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatattata 470  Q
    |||| ||| |||||| ||| ||| |||||||||||||||||||| ||||||||   ||||||||||    
T  36547673 catttaatgaatgaacctagaaaatgaatttttgcttataatagtgaccggaggatgtatattata 36547738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 458
Target Start/End: Original strand, 40417009 - 40417046
Alignment:
Q  421 ctaaaaagtgaatttttgcttataatagcgaccggaga 458  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  40417009 ctaaaaagtgaatttttgcttatattagtgaccggaga 40417046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 43103126 - 43103073
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    ||||| ||||||||||  ||||| || |||||||||||||||||| ||||||||    
T  43103126 tcatttaataaatgaatttaaaatgttaatttttgcttataatagtgaccggag 43103073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 7104662 - 7104698
Alignment:
Q  377 ttataagcaaaagttgactttttaggttcattcaata 413  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  7104662 ttataagcaaaaattgacattttaggttcattcaata 7104698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 12806923 - 12806955
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  12806923 tattataagaaaaagttgactttttaggttcat 12806955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 21099373 - 21099329
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| ||||||| ||||||||  ||||||||||||||||    
T  21099373 ctattataagtaaaagttcactttttatattcattcaataaatga 21099329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 30006001 - 30005962
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  30006001 tataagcaaaa-ttgactttttaggttcattcaattaatga 30005962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 34703546 - 34703582
Alignment:
Q  421 ctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  34703546 ctaaaaagtgaatttttgcttatattagtgaccggag 34703582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 35160764 - 35160803
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  35160764 tataagcaaaa-ttgactttttaggttcattcaattaatga 35160803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 35160874 - 35160835
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  35160874 tataagcaaaa-ttgactttttaggttcattcaatgaatga 35160835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 40198619 - 40198651
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  40198619 tattataagaaaaagttgactttttaggttcat 40198651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 41487806 - 41487838
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  41487806 tattataagaaaaagttgactttttaggttcat 41487838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 47484154 - 47484122
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  47484154 tattataagtaaaagttgactttttaggttcat 47484122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 31632252 - 31632193
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| ||  |||||||||| |||||||||||||||||||||||| |||||||||    
T  31632252 tactccctccggtcactattataagtaaaagttgactttttaggttcatttaataaatga 31632193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 18491791 - 18491749
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  18491791 ctattataagtaaaagttgactttttaggttcattcaataaat 18491749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 13463062 - 13463018
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||    
T  13463062 ctattataagcaaaaattgactttttaggttcattcattaaatga 13463018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 32124253 - 32124212
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  32124253 tattataagcaaaaattgactttttagattcattcaataaat 32124212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 464
Target Start/End: Original strand, 31996585 - 31996645
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    ||||| |||||||||| |||||| ||  ||||||||||||||||| |||||||||| ||||    
T  31996585 tcatttaataaatgaacctaaaatgttgatttttgcttataatagtgaccggagagtgtat 31996645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 3203816 - 3203757
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||| ||||||||  ||||||||||||||| |  |||||||||||||||| |||||||||    
T  3203816 tacttcctccagtcactattataagcaaaaatcaactttttaggttcatttaataaatga 3203757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 466
Target Start/End: Complemental strand, 3203725 - 3203663
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatat 466  Q
    ||||||| | |||||| ||||||| |  ||||||||||||||||| |||||||| ||||||||    
T  3203725 tcattcattgaatgaacctaaaaaattgatttttgcttataatagtgaccggagggagtatat 3203663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 470
Target Start/End: Original strand, 13463018 - 13463084
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtatattata 470  Q
    ||||| ||| |||||| ||||||||| ||||||||||||||||||  ||| ||  ||||||||||||    
T  13463018 tcatttaatgaatgaacctaaaaagtcaatttttgcttataatagttaccagatggagtatattata 13463084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 32124220 - 32124270
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    |||||| ||||||||| |||||||||||||||||  ||||| |||||||||    
T  32124220 aatgaatctaaaaagtcaatttttgcttataataatgaccgaagagagtat 32124270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 18097114 - 18097061
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    ||||| |||||||||| |||||| || || ||||||||||||||| ||||||||    
T  18097114 tcattaaataaatgaatctaaaatgtaaacttttgcttataatagtgaccggag 18097061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 24110230 - 24110271
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaa 415  Q
    |||||||||||||||||||| |||||||||| ||||| ||||    
T  24110230 ctattataagcaaaagttgattttttaggttaattcattaaa 24110271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 27964279 - 27964336
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||||||| ||  || |||||||||||| |||||||||||||||||||||||||||    
T  27964279 tactccctccggtcacttttataagcaaaaattgactttttaggttcattcaataaat 27964336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 41824404 - 41824346
Alignment:
Q  360 actccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||| ||  ||| |||||| |||| |||||||||||||||||||||||||||||    
T  41824404 actccctccggtcactactataagtaaaaattgactttttaggttcattcaataaatga 41824346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 23143632 - 23143572
Alignment:
Q  358 ctactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||  ||||||||||||||| |  |||||||||||| |||||||||||||    
T  23143632 ctactccctccggtcactattataagcaaaaatcaactttttaggtttattcaataaatga 23143572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 23555422 - 23555362
Alignment:
Q  358 ctactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| ||  ||||||||||||||| |  |||||||||||| |||||||||||||    
T  23555422 ctactccctccggtcactattataagcaaaaatcaactttttaggtttattcaataaatga 23555362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 44274552 - 44274596
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  44274552 ctattataaacaaaagttgacattttagattcattcaataaatga 44274596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Original strand, 26229541 - 26229584
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||    
T  26229541 aatgaacctaaaaaatgaatttttgcttataatagtgaccggag 26229584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 27306726 - 27306765
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataa 414  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  27306726 tattataagaaaaagttgactttttaggttcattgaataa 27306765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 464
Target Start/End: Complemental strand, 27964328 - 27964278
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    |||||| ||||||||| ||||||||||||||| || |||||||| ||||||    
T  27964328 aatgaacctaaaaagtcaatttttgcttataaaagtgaccggagggagtat 27964278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 44274637 - 44274686
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagta 463  Q
    |||||| ||||||||||||||||||||||||  || |||||||| |||||    
T  44274637 aatgaatctaaaaagtgaatttttgcttatatcagtgaccggagggagta 44274686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 14952775 - 14952819
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||||||  |||||||  ||||||||||||||||    
T  14952775 ctattataagcaaaagtttgctttttaaattcattcaataaatga 14952819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 15239825 - 15239793
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  15239825 tattataagaaaaagttgactttttaggttcat 15239793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 28143878 - 28143846
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  28143878 tattataagaaaaagttgactttttaggttcat 28143846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 32316471 - 32316419
Alignment:
Q  405 cattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||| ||| |||||| ||| ||| |||||||||||||||||||| ||||||||    
T  32316471 catttaatgaatgaacctagaaaatgaatttttgcttataatagtgaccggag 32316419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 466
Target Start/End: Complemental strand, 33407430 - 33407386
Alignment:
Q  422 taaaaagtgaatttttgcttataatagcgaccggagagagtatat 466  Q
    |||||||| ||||||  |||||||||| |||||||||||||||||    
T  33407430 taaaaagtaaattttctcttataatagagaccggagagagtatat 33407386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 43542928 - 43542972
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||  |||||| ||||||||| ||||||||||||||||    
T  43542928 ctattataagagaaagttcactttttagattcattcaataaatga 43542972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 44274667 - 44274627
Alignment:
Q  378 tataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||| || ||||||||| ||||||||||||||||    
T  44274667 tataagcaaaaattcactttttagattcattcaataaatga 44274627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 17800640 - 17800683
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  17800640 tattataaacaaaagttgacttattaggttcattcaataaatga 17800683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 24418876 - 24418935
Alignment:
Q  359 tactccctccagtagctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||| ||  |||||||| || ||||||||||||||| |||||||||||||||||    
T  24418876 tactccctccggtcactattataggctaaagttgactttttaagttcattcaataaatga 24418935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 24820308 - 24820352
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || |||| |||||||||||||||||||||    
T  24820308 ctattataagcaaaaattcacttcttaggttcattcaataaatga 24820352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 36308002 - 36308046
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||    
T  36308002 ctattataaataaaagttgattttttaggttcattcaataaatga 36308046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 6260620 - 6260663
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||||||| |||||||||| ||| |||||||||    
T  6260620 tattataagcaaaagttgaatttttaggtttatttaataaatga 6260663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Original strand, 24820393 - 24820436
Alignment:
Q  414 aatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||    
T  24820393 aatgaatctaaaaagagaatttttgcttataatagtgaccggag 24820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 45145466 - 45145508
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    |||||| |||||||||||||| ||||||||| |||||||||||    
T  45145466 ctattacaagcaaaagttgacattttaggtttattcaataaat 45145508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 9056115 - 9056160
Alignment:
Q  412 taaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||||| | |||||||||||||||||||||||| ||| ||||||||    
T  9056115 taaatgtatctaaaaagtgaatttttgcttatattagtgaccggag 9056160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 24419007 - 24418966
Alignment:
Q  377 ttataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||| || ||||||||| ||||||||||||||||    
T  24419007 ttataagcaaaaattcactttttagattcattcaataaatga 24418966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 34604796 - 34604837
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    ||||||||| |||||||||||||||||||||||  |||||||    
T  34604796 tattataagaaaaagttgactttttaggttcatagaataaat 34604837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 44319575 - 44319522
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    ||||| |||||||||| |||||| || || ||||||||||||||| ||||||||    
T  44319575 tcatttaataaatgaatctaaaatgttaacttttgcttataatagtgaccggag 44319522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 2552916 - 2552884
Alignment:
Q  386 aaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||||||||||||||| |||||    
T  2552916 aaagttgactttttaggttcattcaattaatga 2552884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 7428902 - 7428946
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || |  |||||||||||||||||||||||    
T  7428902 ctattataagcaaaaattcatattttaggttcattcaataaatga 7428946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 13832008 - 13831976
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcat 407  Q
    ||||||||| |||||||||||||||||||||||    
T  13832008 tattataagaaaaagttgactttttaggttcat 13831976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 13841858 - 13841902
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| || ||||||||  ||||||||||||||||    
T  13841858 ctattataagcaaaaatttactttttaaattcattcaataaatga 13841902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 464
Target Start/End: Original strand, 17986280 - 17986340
Alignment:
Q  404 tcattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggagagagtat 464  Q
    ||||| ||| |||||| |||||||||  |||||| |||||||||| || ||||||||||||    
T  17986280 tcatttaatgaatgaacctaaaaagttgatttttacttataatagtgatcggagagagtat 17986340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 24820427 - 24820383
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||||||||| ||  |||||||| ||||||||||||||||    
T  24820427 ctattataagcaaaaattctctttttagattcattcaataaatga 24820383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 28882674 - 28882718
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||| |||||||||  ||||||||| ||||||||||||||||    
T  28882674 ctattatgagcaaaagtctactttttagattcattcaataaatga 28882718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 35781237 - 35781281
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    ||||||||| ||||| || | ||||||||||||||||||||||||    
T  35781237 ctattataaacaaaattttattttttaggttcattcaataaatga 35781281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 26722 - 26669
Alignment:
Q  357 actactccctccagtagctattataagcaaaagttgactttttaggttcattcaat 412  Q
    |||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||    
T  26722 actactccatcc-gtagctattataagcaaat-ttgactttttaggttcattcaat 26669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 13041 - 13000
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaat 416  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||    
T  13041 tattataagtaaaagtttactttttagattcattcaataaat 13000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 21134 - 21174
Alignment:
Q  375 tattataagcaaaagttgactttttaggttcattcaataaa 415  Q
    ||||||||| |||||||||||||||| ||||||| ||||||    
T  21134 tattataagtaaaagttgactttttaagttcattaaataaa 21174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 21251 - 21207
Alignment:
Q  374 ctattataagcaaaagttgactttttaggttcattcaataaatga 418  Q
    |||||||||||||| ||| ||||||||| |||||| |||||||||    
T  21251 ctattataagcaaatgttcactttttagattcatttaataaatga 21207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 4460 - 4512
Alignment:
Q  405 cattcaataaatgaagctaaaaagtgaatttttgcttataatagcgaccggag 457  Q
    |||| ||| |||||| ||| ||| |||||||||||||||||||| ||||||||    
T  4460 catttaatgaatgaacctagaaaatgaatttttgcttataatagtgaccggag 4512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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