View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5958_low_21 (Length: 239)
Name: NF5958_low_21
Description: NF5958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5958_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29104233 - 29104012
Alignment:
| Q |
1 |
cgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29104233 |
cgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacagag |
29104134 |
T |
|
| Q |
101 |
gaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29104133 |
gaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaat |
29104034 |
T |
|
| Q |
201 |
cttacttatacagtccagaatc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29104033 |
cttacttatacagtccagaatc |
29104012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 29089928 - 29089751
Alignment:
| Q |
45 |
tgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagattacagcaacgt |
144 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||| |||||||||| |||| | |||||||||| ||||| | | ||| |||||||||||||||| |
|
|
| T |
29089928 |
tgaaggactcttccaaatcgctggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatcttaccaagcttacagattacagcaacgt |
29089829 |
T |
|
| Q |
145 |
gctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatc |
222 |
Q |
| |
|
||| ||||| |||||||| ||||||||||| || ||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
29089828 |
gctttctgaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccagaatc |
29089751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University